New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3364670	65 (1.150)	5 (0.090)	5/248	NT	8.0%	coding (556/879 nt)	PP_2961	LysR family transcriptional regulator
	?	NC_002947	= 3364696	52 (0.960)					coding (530/879 nt)	PP_2961	LysR family transcriptional regulator

ATGCCCAGGCCTCCGAGGACCATCTCACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3364519‑3364670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccAGCCACGCGAGCCCGCCGAACTGGCAGGCCACAACTGCATCGCCTTCACCTTGCTTGAGCATTACGACCGCTGGCACTTCACCCATCGTGGCGAAGCACTTGAGGTTGCAATCAAAGGCAACGTCACCAGCAACAACAGCGAGG  <  NC_002947/3364696‑3364553                                                                                                                                                                                                                                                                                                          ATGCCCAGGCCTCCGAGGACCATCTCACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTG                                                                                                                                                     <  4:133410/149‑1    CCCAGGCCTCCGAGGACCATCTCACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCC                                                                                                                                                  >  7:82089/1‑149    CCCAGGCCTCCGAGGACCATCTCACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCC                                                                                                                                                  >  8:331758/1‑149                                                   GGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCAGCCACGCGAGCCCGCCGAACTGGCAGGCC                                                                                                                    <  1:215527/132‑1                                                   GGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCAGCCACGCGAGCCCGCCGAACTGGCAGGCC                                                                                                                    >  2:215527/1‑132                                                               TTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCAGTCACGCGAGCCCGCCGAACTGGCAGGC                                                                                                                     <  1:193056/119‑1                                                               TTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCAGCCACGCGAGCCCGCCGAACTGGCAGGC                                                                                                                     >  2:193056/1‑119                                                                                                            GCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCCAGCCACGCGAGCCCGCCGAACTGGCAGGCCAC                                                                                                                  >  3:274377/1‑77                                                                                                                                                    TGGCCAGCCACGCGAGCCCGCCGAACTGGCAGGCCACAACTGCATCGCCTTCACCTTGCTTGAGCATTACGACCGCTGGCACTTCACCCATCGTGGCGAAGCACTTGAGGTTGCAATCAAAGGCAACGTCACCAGCAACAACAGCGAGG  <  5:164499/149‑1                                                                                                                                                                                                                                                                                                          ATGCCCAGGCCTCCGAGGACCATCTCACGAATGGCCTCGCTGTTGTTGCTGGTGACGTTGCCTTTGATTGCAACCTCAAGTGCTTCGCCACGATGGGTGAAGTGCCAGCGGTCGTAATGCTCAAGCAAGGTGAAGGCGATGCAGTTGTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3364519‑3364670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccAGCCACGCGAGCCCGCCGAACTGGCAGGCCACAACTGCATCGCCTTCACCTTGCTTGAGCATTACGACCGCTGGCACTTCACCCATCGTGGCGAAGCACTTGAGGTTGCAATCAAAGGCAACGTCACCAGCAACAACAGCGAGG  <  NC_002947/3364696‑3364553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.