New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3400459	58 (1.030)	3 (0.050)	3/250	NT	5.1%	coding (111/549 nt)	PP_3006	ECF family RNA polymerase sigma‑70 factor
	?	NC_002947	= 3400496	56 (1.020)					coding (74/549 nt)	PP_3006	ECF family RNA polymerase sigma‑70 factor

CCAGGTGGCGGGTAATGCTGTAGATCCAGCCTCGAGCCGAGCCGCGCGCCGGGTCGTAGCTGGCTGCGCGGGTCCAGATGCGGATGATCGCATCGTGGACGATGTCTTCTGCGGTGGCGTCGTCACGTGCGATACGCCGGGCAACGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3400311‑3400459 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccTGCAGGCGCTCTACGATCACGAAGGCGCGCGCCTGCTGGGC  <  NC_002947/3400496‑3400456                                                                                                                                                                                                CCAGGTGGCGGGTAATGCTGTAGATCCAGCCTCGAGCCGAGCCGCGCGCCGGGTCGTAGCTGGCTGCGCGGGTCCAGATGCGGATGATCGCATCGTGGACGATGTCTTCTGCGGTGGCGTCGTCACGTGCGATACGCCGGGCAACG                                              <  3:336039/146‑1 CCAGGTGGCGGGTAATGCTGTAGATCCAGCCTCGAGCCGAGCCGCGCGCCGGGTCGTAGCTGGCTGCGCGGGTCCAGATGCGGATGATCGCATCGTGGACGATGTCTTCTGCGGTGGCGTCGTCACGTGCGATACGCCGGGCAACG                                              >  4:336039/1‑146  CAGGTGGCGGGTAATGCTGTAGATCCAGCCTCGAGCCGAGCCGCGCGCCGGGTCGTAGCTGGCTGCGCGGGTCCAGATGCGGATGATCGCATCGTGGACGATGTCTTCTGCGGTGGCGTCGTCACGTGCGATACGCCGGGCAACGCC                                            >  1:119494/1‑147                                          CCGCGCGCCGGGTCGTAGCTGGCTGCGCGGGTCCAGATGCGGATGATCGCATCGTGGACGATGTCTTCTGCGGTGGCGTCGTCACGTGCGATACGCCGGGCAACGCCCTGCAGGCGCTCTACGATCACGAAGGCGCGCGCCTGCTGGGC  <  2:236934/149‑1                                                                          CCAGATGCGGATGATCGCATCGTGGACGATGTCTTCTGCGGTGGCGTCGTCACGTGCGATACGCCGGGCAACGCCCTGCAGGCGCTCTACGATCACGAAGGCGCGCGCCTGCT      >  3:618/1‑113                                                                          CCAGATGCGGATGATCGCATCGTGGACGATGTCTTCTGCGGTGGCGTCGTCACGTGCGATACGCCGGGCAACGCCCTGCAGGCGCTCTACGATCACGAAGGCGCGCGCCTGCT      <  4:618/113‑1                                                                                                                                                                                                CCAGGTGGCGGGTAATGCTGTAGATCCAGCCTCGAGCCGAGCCGCGCGCCGGGTCGTAGCTGGCTGCGCGGGTCCAGATGCGGATGATCGCATCGTGGACGATGTCTTCTGCGGTGGCGTCGTCACGTGCGATACGCCGGGCAACGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3400311‑3400459 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccTGCAGGCGCTCTACGATCACGAAGGCGCGCGCCTGCTGGGC  <  NC_002947/3400496‑3400456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.