New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3424404 =	44 (0.780)	3 (0.060)	3/246	NT	6.1%	coding (355/363 nt)	PP_3039	hypothetical protein
	?	NC_002947	3424455 =	51 (0.950)					intergenic (+43/‑469)	PP_3039/PP_3040	hypothetical protein/holin

TGCGCTGCACACGCCTATGTGCGCGCCTTCGTGTGTACGGTGGGACGGTGGGACAGCCCGCGACCTGCGCGGGCTTGAGCTAGGCTGACCTGCATCAAACGCGGCAGGACGGCAGCGGGACGGTAGGACCGTGGATGGCGAATCATGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3424554‑3424404 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgcGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAGCGCATCACGCGCGCGTTGCGCGCAGCGTGCTTTTAATCTCTCTCTT  >  NC_002947/3424455‑3424596                                                                                                                                                                                                                                                                                                       TGCGCTGCACACGCCTATGTGCGCGCCTTCGTGTGTACGGTGGGACGGTGGGACAGCCCGCGACCTGCGCGGGCTTGAGCTAGGCTGACCTGCATCAAACGCGGCAGGACGGCAGCGGGACGGTAGGACCGTGGATGGCGAATCATGCC                                                                                                                                                  <  8:1268/149‑1                                                                                               TCAAACGCGGCAGGACGGCAGCGGGACGGTAGGACCGTGGATGGCGAATCATGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGT                                                    >  6:142179/1‑149                                                                                                  AACGCGGCAGGACGGCAGCGGGACGGTAGGACCGTGGATGGCGAATCATGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTG                                                   >  1:295055/1‑147                                                                                                   ACGCGGCAGGACGGCAGCGGGACGGTAGGACCGTGGATGGCGAATCATGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAG                                                >  1:267964/1‑149                                                                                                                                                  TGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAGCGCATCACGCGCGCGTTGCGCGCAGCGTGCTTTTAATCTCTCTCTT  >  8:267609/1‑148                                                                                                                                                  TGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTG                                                   >  5:274775/1‑99                                                                                                                                                  TGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTG                                                   <  6:274775/99‑1                                                                                                                                                                                                                                                                                                       TGCGCTGCACACGCCTATGTGCGCGCCTTCGTGTGTACGGTGGGACGGTGGGACAGCCCGCGACCTGCGCGGGCTTGAGCTAGGCTGACCTGCATCAAACGCGGCAGGACGGCAGCGGGACGGTAGGACCGTGGATGGCGAATCATGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3424554‑3424404 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgcGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAGCGCATCACGCGCGCGTTGCGCGCAGCGTGCTTTTAATCTCTCTCTT  >  NC_002947/3424455‑3424596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.