New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3424404 =	44 (0.780)	3 (0.060)	3/246	NT	6.1%	coding (355/363 nt)	PP_3039	hypothetical protein
	?	NC_002947	3424455 =	51 (0.950)					intergenic (+43/‑469)	PP_3039/PP_3040	hypothetical protein/holin

AGCTCTACCTGGTGGTTCGTGAGCACTACTGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTG  >  NC_002947/3424258‑3424545                                                                                                                                                   |                                                                                                                                              aGCTCTACCTGGTGGTTCGTGAGCACTACTGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCg                                                                                                                                             <  4:294949/149‑1 (MQ=255)    tctACCTGGTGGTTCGTGAGCACTACTGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCa                                                                                                                                          >  5:109060/1‑149 (MQ=255)     aagagagagattaaaagcacgctgcgcgcaacgcgcgcgtgatgcgctgcacacgcctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgggcttgagctaggctgacctgcatcaaacGCGGCa                                                                                                                                          >  8:267609‑M1/143‑148 (MQ=255)       aCCTGGTGGTTCGTGAGCACTACTGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCATGCTTGCTCTTGGGGCGAGCGGCATGa                                                                                                                                       >  1:339842/1‑149 (MQ=255)        ccTTGTGGTTCGTGAGCACTACTGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCAt                                                                                                                                         <  5:102045/146‑1 (MQ=255)                                tAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTc                                                                                                                       <  8:50913/140‑1 (MQ=255)                                tAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTc                                                                                                                       >  7:50913/1‑140 (MQ=255)                                 aaCGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTccc                                                                                                             >  8:302497/1‑149 (MQ=255)                                   cGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGc                                                                                                           >  8:154049/1‑149 (MQ=255)                                    gCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCt                                                                                                          <  5:127638/149‑1 (MQ=255)                                    gCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCt                                                                                                          <  7:154049/149‑1 (MQ=255)                                    gCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGAGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCt                                                                                                          <  4:172416/149‑1 (MQ=255)                                     ccGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTg                                                                                                         >  6:211201/1‑149 (MQ=255)                                                   ctgcacacgcctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgggcttgagctaggctgacctgcatcaaacGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGt                                                                                           >  1:267964‑M1/97‑149 (MQ=255)                                                     ccAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGttt                                                                                         >  6:45793/1‑149 (MQ=255)                                                     ccAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGttt                                                                                         >  3:278461/1‑149 (MQ=255)                                                     ccAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTAGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGttt                                                                                         >  5:371636/1‑149 (MQ=255)                                                     ccAAAAGTACCCTCACTGTGCGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTCTAACGCAGGCTTGCTCTTGGTGCGAGCGGCATGATACGCCATCCACGGTCATACCGTCCCGCTCCCGTCATGCCGCGttt                                                                                         >  8:13379/1‑149 (MQ=255)                                                      cacacgcctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgggcttgagctaggctgacctgcatcaaacGCGGCa                                                                                                                                          <  6:274775‑M1/6‑1 (MQ=255)                                                      cacacgcctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgggcttgagctaggctgacctgcatcaaacGCGGCa                                                                                                                                          >  5:274775‑M1/94‑99 (MQ=255)                                                      cacacgcctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgggcttgagctaggctgacctgcatcaaacGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGtt                                                                                          >  1:295055‑M1/94‑147 (MQ=255)                                                       acacgcctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgggcttgagctaggctgacctgcatcaaacGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGa                                                                                       >  6:142179‑M1/93‑149 (MQ=255)                                                         aaGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATg                                                                                     >  4:159188/1‑149 (MQ=255)                                                            tACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGAt                                                                                      >  3:232217/1‑145 (MQ=255)                                                            tACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGAt                                                                                      <  4:232217/145‑1 (MQ=255)                                                              ccGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGt                                                                                >  5:180398/1‑149 (MQ=255)                                                                   aCTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGcc                                                                           <  5:45793/149‑1 (MQ=255)                                                                         ggTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTc                                                                     <  1:3652/149‑1 (MQ=255)                                                                                ccGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCcg                                                              >  8:3934/1‑149 (MQ=255)                                                                                    gATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCcgcg                                                            >  1:238295/1‑147 (MQ=255)                                                                                         cTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTcg                                                     >  3:153068/1‑149 (MQ=255)                                                                                              aCAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCggg                                                 <  6:109060/148‑1 (MQ=255)                                                                                               cAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAg                                                         <  8:282924/139‑1 (MQ=255)                                                                                               cAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAg                                                         >  7:282924/1‑139 (MQ=255)                                                                                                aaGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTg                                              >  6:359303/1‑149 (MQ=255)                                                                                                 aGCGCTTACATGAGGCGCACGTCGGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTgt                                             <  3:172298/149‑1 (MQ=255)                                                                                                  gcgcTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCCCGGTCCtt                                                                                                                    >  7:244124/1‑76 (MQ=255)                                                                                                    ggttACATGAGGCGCACGTCTGTATCGCAGGCTTGGTCTAGGGGCGAGCGGCAAGATTCGCCATCCACGGTCCTACCGTCCCGGTGGCGTCCTGCCGCGTTTGTTGCAGGTCAGCCTAGCTCAAGCCCCCGCAGGTCGCGGGCTgtcc                                           >  2:66349/3‑148 (MQ=255)                                                                                                        aCATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAg                                                                                  >  3:245094/1‑105 (MQ=255)                                                                                                        aCATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAg                                                                                  <  4:245094/105‑1 (MQ=255)                                                                                                            gAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTgtcccaccgtcc                                   >  3:335389/1‑148 (MQ=255)                                                                                                            gAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTgtcccaccgtcc                                   >  7:76314/1‑148 (MQ=255)                                                                                                             aGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTgtcccaccgtccc                                  <  2:238295/148‑1 (MQ=255)                                                                                                               gcgcACGTCTGTATCGCTTGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCTAGCCCGCGCAGGTcgc                                                    <  6:47339/128‑1 (MQ=255)                                                                                                                 gcACGTCTCTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGACCTGCCGCGTTTGATGCAg                                                                                  >  4:238035/1‑96 (MQ=255)                                                                                                                      tCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTAGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCCCGTTTGATGCAGGACAGCCTAGCACAAGCCCGCGCACTACGCGGCCGGTCCCACCCTCCCACCGAacacc                        >  4:4110/1‑148 (MQ=255)                                                                                                                            tCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAg                   <  7:302497/148‑1 (MQ=255)                                                                                                                              gCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGgcg                >  8:238775/1‑149 (MQ=255)                                                                                                                               cAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTACCACCGTCCCACCGTACACACGAAGgcgc               <  7:13379/149‑1 (MQ=255)                                                                                                                                            ggggCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGc     <  6:180398/146‑1 (MQ=255)                                                                                                                                             gggCGAGCGGCATGTTTCGCCATCCACGTTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATCGGCgtg  <  3:4110/148‑1 (MQ=255)                                                                                                                                              ggCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTacaca                        <  1:231738/125‑1 (MQ=255)                                                                                                                                              ggCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTacaca                        >  2:231738/1‑125 (MQ=255)                                                                                                                                                   |                                                                                                                                              AGCTCTACCTGGTGGTTCGTGAGCACTACTGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTG  >  NC_002947/3424258‑3424545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.