New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3517942 =	56 (0.990)	3 (0.060)	3/246	NT	6.3%	coding (59/432 nt)	PP_3109	hypothetical protein
	?	NC_002947	3517985 =	36 (0.670)					coding (102/432 nt)	PP_3109	hypothetical protein

AAGTAATAGACCTTCTGCCCTTCCCCCTTCAACCTGATCAACCCGCGCCAACGGCGCATAGCTACCCGGCTCGGACAGGTACACCTCCCGGTGCAGGTCGTCGCGCTCCATGTCACTGTCACCTGCCCATCCAGGTTCAGCTGGTGCAAGTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3518095‑3517942 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtgacATGGAGCGCGACGACCTGCACCGGGAGGTGTACCTGTCCGAGCCGGGTAGCTATGCGCCGTTGGCGCGGGTTGATCAGGTTGAAGGGGGAAGGGCAGAAGGTCTATTACTTCCATACGGGCCAGGTTGGTACGCCGCTGGAACTGAC  >  NC_002947/3517985‑3518131                                                                                                                                                                                                                                                                                                               acGTAATCCACCATCTGCCCTCCCCCCTTCACCCTGATCAACCCGCGCCACCGGCGCATAGCTACCCGGCTCGGACAGGTACACCTCCCGGTGCAGGTCGTCGCGCTCCATGTCACTGTCACCTGCCCATCCAGGTTCAGCTGGTGCAA                                                                                                                                                          <  8:86900/147‑1                                                                                                             CATGTCACTGTCACCTGCCCATCCAGGTTCAGCTGGTGCAAGTGACATGGAGCGCGACGACCTGCACCGGGAGGTGTACCTGTCCGAGCCGGGTAGCTATGCGCCGTTGGCGCGGGTTGAGCAGGTTGAAGGGGGAAGGGCAGAAGGTC                                              >  7:263772/1‑149                                                                                                                    CTGTCACCTGCCCATCCAGGTTCAGCTGGTGCAAGTGACATGGAGCGCGACGACCTGCACCGGGAGGTGTACCTGTCCGAGCCGGGTAGCTATGCGCCGTTGGCGCGGGTTGATCAGGT                                                                     >  5:347645/1‑119                                                                                                                    CTGTCACCTGCCCATCCAGGTTCAGCTGGTGCAAGTGACATGGAGCGCGACGACCTGCACCGGGAGGTGTACCTGTCCGAGCCGGGTAGCTATGCGCCGTTGGCGCGGGTTGATCAGGT                                                                     <  6:347645/119‑1                                                                                                                                                     AGTGACATGGAGCGCGACGACCTGCACCGGGAGGTGTACCTGTCCGAGCCGGGTAGCTATGCGCCGTTGGCGCGGGTTGATCAGGTTGAAGGGGGAAGGGCAGAAGGTCTATTACTTCCATACGGGCCAGGTTGGTACGCCGCTGGAAC      <  1:349513/149‑1                                                                                                                                                         ACATGGAGCGCGACGACCTGCACCGGGAGGTGTACCTGTCCGAGCCGGGTAGCTATGCGCCGTTGGCGCGGGTTGATCAGGTTGAAGGGGGAAGGGCAGAAGGTCTATTACTTCCATACGGGCCAGGTTGGTACGCCGCTGGAACTGAC  >  7:59006/1‑149                                                                                                                                                          CATGGAGCGCGACGACCTGCACCGGGAGGTGTACCTGTCCGAGCCGGGTAGCTATGCGCCGTTGGCGCGGGTTGATCAGGTTGAAGGGGGAAGGGCAGAAGGTCTATTACTTCCATACGGGCCAGGTTGGTACGCCGCTGGAACTGAC  <  7:245153/148‑1                                                                                                                                                                                                                                                                                                               AAGTAATAGACCTTCTGCCCTTCCCCCTTCAACCTGATCAACCCGCGCCAACGGCGCATAGCTACCCGGCTCGGACAGGTACACCTCCCGGTGCAGGTCGTCGCGCTCCATGTCACTGTCACCTGCCCATCCAGGTTCAGCTGGTGCAAGTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3518095‑3517942 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtgacATGGAGCGCGACGACCTGCACCGGGAGGTGTACCTGTCCGAGCCGGGTAGCTATGCGCCGTTGGCGCGGGTTGATCAGGTTGAAGGGGGAAGGGCAGAAGGTCTATTACTTCCATACGGGCCAGGTTGGTACGCCGCTGGAACTGAC  >  NC_002947/3517985‑3518131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.