New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3585486 =	48 (0.850)	4 (0.070)	3/250	NT	7.3%	coding (499/762 nt)	benD	1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase
	?	NC_002947	3585528 =	55 (1.000)					coding (541/762 nt)	benD	1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase

CGGTGCCGCCGGGCGCAGTGGCGTTGACGCGGATGCCCCGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3585531‑3585486 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcACCGAAGCACCGCCCCGGCGCGTACCGCGCAACAGTGCAGAGCAAACCGAGCAGGAAAAGCGCTGGTACCAGCAGATCGTCGACCAGACCCTCGACAGCAGCCTGATGCACCGCTACGGCAGCATCGACGAGCAGGTGGGGGCCATT  >  NC_002947/3585528‑3585674                                                                                                                                                                                                   CGGTGCCGCCGGGCGCAGTGGCGTTGACGCGGATGCCCCGGCCGGCACCGAAGCACCGCCCCGGCGCGTACCGCGCAACAGTGCAGAGCAAACCGAGCAGGAAAAGCGCTGGTACCAGCAGATCGTCGACCAGACCCTCGACAGCAGCC                                              >  8:82209/1‑149   GTGCCGCCGGGCGCAGTGGCGTTGACGCGGATGCCCCGGCCGGCACCGAAGCACCGCCCCGGCGCGTACCGCGCAACAGTGCAGAGCAAACCGAGCAGGAAAAGCGCTGGTACCAGCAGATCGTCGACCAGACCCTCGACAGCAGCCT                                             >  2:87498/1‑148   GTGCCGCCGGGCGCAGTGGCGTTGACGCGGATGCCCCGGCCGGCACCGAAGCACCGCCCCGGCGCGTACCGCGCAACAGTGCAGAGCAAACCGAGCAGGAAAAGCGCTGGTACCAGCAGATCGTCGACCAGACCCTCGACAGCAGCCT                                             >  5:342528/1‑148    TGCCGCCGGGCGCAGTGGCGTTGACGCGGATGCCCCGGCCGGCACCGAAGCACCGCCCCGGCGCGTACCGCGCAACAGTGCAGAGCAAACCGAGCAGGAAAAGCGCTGGTACCAGCAGATCGTCGACCAGACCCTCGACAGCAGCCTGA                                           <  7:82209/149‑1                                             GCACCGAAGCACCGCCCCGGCGCGTACCGCGCAACAGTGCAGAGCAAACCGAGCAGGAAAAGCGCTGGTACCAGCAGATCGTCGACCAGACCCTCGACAGCAGCCTGATGCACCGCTACGGCAGCATCGACGAGCAGGTGGGGGCCATT  <  6:197254/149‑1                                             GCACCGAAGCACCGCCCCGGCGCGTACCGCGCAACAGTGCAGAGCAAACCGAGCAGGAAAAGCGCTGGTACCAGCAGATCGTCGACCAGACCCTCGACAGCAGCCTGATGCACCGCTACGGCAGCATCGACAAGCAGGTGGGGGCCATT  <  1:259010/149‑1                                                                                                                                                                                                   CGGTGCCGCCGGGCGCAGTGGCGTTGACGCGGATGCCCCGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3585531‑3585486 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcACCGAAGCACCGCCCCGGCGCGTACCGCGCAACAGTGCAGAGCAAACCGAGCAGGAAAAGCGCTGGTACCAGCAGATCGTCGACCAGACCCTCGACAGCAGCCTGATGCACCGCTACGGCAGCATCGACGAGCAGGTGGGGGCCATT  >  NC_002947/3585528‑3585674

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.