New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3750698	51 (0.900)	6 (0.110)	5/250	NT	9.7%	coding (302/471 nt)	PP_3315	membrane protein
	?	NC_002947	= 3750761	62 (1.130)					coding (239/471 nt)	PP_3315	membrane protein

GCTCACGCAACAGCCAGTAGGTCAGCCCCAGGGCCAGGGTGGCGCCAGCGAGCGCCGCGACTTTGGCCGGGCTGACATCGGGATCAAGGATCACGATCTTGCGCGACAGCGCGATCAACCCGATCAAGAGGACCGTCTTGACCTGAATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3750549‑3750698 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaCGCTGCTGATCGCGATGGAATTCAAGCATTCCATCGTGCGCGTTGTCTTGCGCCATGGCAGCATCATTCAGGTCAAGACGGTCCTCTTGATCGGGTTGATCGCGCTGTCGCGCAAGATCGTGATCCTTGATCCCGATGTCAGCCCGGC  <  NC_002947/3750761‑3750614                                                                                                                                                                                                                                                                                                            GCTCACGCAACAGCCAGTAGGTCAGCCCCAGGGCCAGGGTGGCGCCAGCGAGCGCCGCGACTTTGGCCGGGCTGACATCGGGATCAAGGATCACGATCTTGCGCGACAGCGCGATCAACCCGATCAAGAGGACCGTCTTGACCTGAA                                                                                                                                                         <  1:153701/147‑1                            CCAGGGCCAGGGTGGCGCCAGCGAGCGCCGCGACTTTGGCCGGGCTGACATCGGGATCAAGGATCACGATCTTGCGCGACAGCGCGATCAACCCGATCAAGAGGACCGTCTTGACCTGAA                                                                                                                                                         <  6:266035/120‑1                                               AGCGAGCGCCGCGACTTTGGCCGGGCTGACATCGGGATCAAGGATCACGATCTTGCGCGACAGCGCGATCAACCCGATCAAGAGGACCGTCTTGACCTGAATGACGCTGCTGATCGCGATGGAATTCAAGCATTCCATCGTGCGCGTTG                                                                                                         >  3:226550/1‑149                                                              TTTGGCCGGGCTGACATCGGGATCAAGGATCACGATCTTGCGCGACAGCGCGATCAACCCGATCAAGAGGACCGTCTTGACCTGAATGACGCTGCTGATCGCGATGGAATTCAAGCATTCCATCGTGCGCGTTGTCTTGCGCCATGG                                                                                            >  1:30775/1‑147                                                                    CGGGCTGACATCGGGATCAAGGATCACGATCTTGCGCGACAGCGCGATCAACCCGATCAAGAGGACCGTCTTGACCTGAATGACGCTGCTGATCGCGATGGAATTCAAGCATTCCATCGTGCGCGTTGTCTTGCGCCATGGCAGCATCA                                                                                    <  2:30775/149‑1                                                                           ACATCGGGATCAAGGATCACGATCTTGCGCGACAGCGCGATCAACCCGATCAAGAGGACCGTCTTGACCTGAATGACGCTGCTGATCGCGATGGAATTCAAGCATTCCATCGTGCGCGTTGTCTTGCGCCATGGCAGCATCATTCAG                                                                               <  4:226550/147‑1                                                                             ATCGGGATCAAGGATCACGATCTTGCGCGACAGCGCGATCAACCCGATCAAGAGGACCGTCTTGACCTGAATGACGCTGCTGATCGCGATGGAATTCAAGCATTCCATCGTGCGCGTTGTCTTGCGCCATGGCAGCATCATTCAG                                                                               <  1:181237/145‑1                                                                             ATCGGGATCAAGGATCACGATCTTGCGCGACAGCGCGATCAACCCGATCAAGAGGACCGTCTTGACCTGAATGACGCTGCTGATCGCGATGGAATTCAAGCATTCCATCGTGCGCGTTGTCTTGCGCCATGGCAGCATCATTCAG                                                                               >  2:181237/1‑145                                                                                                                                                     GACGCTGCTGATCGCGATGGAATTCAAGCATTCCATCGTGCGCGTTGTCTTGCGCCATGGCAGCATCATTCAGGTCAAGACGGTCCTCTTGATCGGGTTGATCGCGCTGTCGCGCAAGATCGTGATCCTTGATCCCGATGTCAGCCCGG   >  4:113649/1‑149                                                                                                                                                      ACGCTGCTGATCGCGATGGAATTCAAGCATTCCATCGTGCGCGTTGTCTTGCGCCATGGCAGCATCATTCAGGTCAAGACGGTCCTCTTGATCGGGTTGATCGCGCTGTCGCGCAAGATCGTGATCCTTGATCCCGATGTCAGCCCGGC  <  4:335457/149‑1                                                                                                                                                                                                                                                                                                            GCTCACGCAACAGCCAGTAGGTCAGCCCCAGGGCCAGGGTGGCGCCAGCGAGCGCCGCGACTTTGGCCGGGCTGACATCGGGATCAAGGATCACGATCTTGCGCGACAGCGCGATCAACCCGATCAAGAGGACCGTCTTGACCTGAATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3750549‑3750698 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaCGCTGCTGATCGCGATGGAATTCAAGCATTCCATCGTGCGCGTTGTCTTGCGCCATGGCAGCATCATTCAGGTCAAGACGGTCCTCTTGATCGGGTTGATCGCGCTGTCGCGCAAGATCGTGATCCTTGATCCCGATGTCAGCCCGGC  <  NC_002947/3750761‑3750614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.