New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3782604	50 (0.880)	3 (0.060)	3/242	NT	5.8%	coding (541/846 nt)	nikC	nickel ABC transporter permease
	?	NC_002947	= 3782647	51 (0.960)					coding (584/846 nt)	nikC	nickel ABC transporter permease

GCATTTTTCTTCGTCACCTTGCTGGGCACTGGCCTGAGCAACGTGATCATCGCCATCGCCCTGTCCCACTGGGCCTGGTATGCGCGCATGGTGCGCGGCCTGGTGATTGCCCAGCGCGGCCGCGAATACGTATTGGCTTCACGCCTGGCCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3782451‑3782604 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggcgATATTGGGCAGCACATGCTGGCGCAGCCGCGCCCAGCGTGAAGCGCCGGCCAGGCGTGAAGCCAATACGTATTCGCGGCCGCGCTGGGCAATCACCAGGCCGCGCACCATGCGCGCATACCAGGCCCAGTGGGACAGGGCGATGG  <  NC_002947/3782647‑3782503                                                                                                                                                                                                                                                                                                             GCATTTTTCTTCGTCACCTTGCTGGGCACTGGCCTGAGCAACGTGATCATCGCCATCGCCCTGTCCCACTGGGCCTGGTATGCGCGCATGGTGCGCGGCCTGGTGATTGCCCAGCGCGGCCGCGAATACGTATTGGCTTCACGCCTGGC                                                                                                                                                        <  5:200259/149‑1   ATTTTTCTTCGTCACCTTGCTGGGCACTGGCCTGAGCAACGTGATCATCGCCATCGCCCTGTCCCACTGGGCCTGGTATGCGCGCATGGTGCGCGGCCTGGTGATTGCCCAGCGCGGCCGCGAATACGTATTGGCTTCACGCCTGGCCG                                                                                                                                                      >  3:339036/1‑149    TTTTTCTTCGTCACCTTGCTGGGCACTGGCCTGAGCAACGTGATCATCGCCATCGCCCTGTCCCACTGGGCCTGGTATGCGCGCATGGTGCGCGGCCTGGTGATTGCCCAGCGCGGCCGCGAATACGTATTGGCTTCCCGCCTGGCCGG                                                                                                                                                     >  5:213188/1‑149      TTTCTTCGTCACCTTGCTGGGCACTGGCCTGAGCAACGTGATCATCGCCATCGCCCTGTCCCACTGGGCCTGGTATGCGCGCATGGTGCGCGGCCTGGTGATTGCCCAGCGCGGCCGCGAATACGTATTGGCTTCACGCCTGGCCGGCG                                                                                                                                                   >  2:296029/1‑149                                        AACGTGATCATCGCCATCGCCCTGTCCCACTGGGCCTGGTATGCGCGCATGGTGCGCGGCCTGGTGATTGCCCAGCGCGGCCGCGAATACGTATTGGCTTCACGCCTGGCCGGCGATATTGGGCAGCACATGCTGGCGCAGCCGCGCC                                                                                                                  >  3:224523/1‑148                                                           CCCTGTCCCACTGGGCCTGGTATGCGCGCATGGTGCGCGGCCTGGTGATTGCCCAGCGCGGCCGCGAATACGTATTGGCTTCACGCCTGGCCGGCGATATTGGGCAGCACATGCTGGCGCAGCCGCGCCCAGCGTGAAGCGCCGGCCAG                                                                                              <  6:351603/149‑1                                                             CTGTCCCACTGGGCCTGGTATGCGCGCATGGTGCGCGGCCTGGTGATTGCCCAGCGCGGCCGCGAATACGTATTGGCTTCACGCCTGGCCGGCGATATTGGGCAGCACATGCTGGCGCAGCCGCGCCCAGCGTGAAGCGCCGGCCAGGC                                                                                            <  4:224523/149‑1                                                                                                                                                       GGCGATATTGGGCAGCACATGCTGGCGCAGCCGCGCCCAGCGTGAAGCGCCGGCCAGGCGTGAAGCCAATACGTATTCGCGGCCGCGCTGGGCAATCACCAGGCCGCGCACCATGCGCGCATACCAGGCCCAGTGGGACAGGGCGATGG  >  2:8957/1‑149                                                                                                                                                       GGCGATATTGGGCAGCACATGCTGGCGCAGCCGCGCCCAGCGTGAAGCGCCGGCCAGGCGTGAAGCCAATACGTATTCGCGGCCGCGCTGGGCAATCACCAGGCCGCGCACCATGCGCGCATACCAGGCCCAGTGGGACAGGGCGATGG  >  8:22217/1‑149                                                                                                                                                       GGCGATATTGGGCAGCACATGCTGGCGCAGCCGCGCCCAGCGTGAAGCGCCGGCCAGGCGTGAAGCCAATACGTATTCGCGGCCGCGCTGGGCAATCACCAGGCCGCGCACCATGCGCGCATACCAGGCCCAGTGGGACAGGGCGATGG  <  8:31409/149‑1                                                                                                                                                                                                                                                                                                             GCATTTTTCTTCGTCACCTTGCTGGGCACTGGCCTGAGCAACGTGATCATCGCCATCGCCCTGTCCCACTGGGCCTGGTATGCGCGCATGGTGCGCGGCCTGGTGATTGCCCAGCGCGGCCGCGAATACGTATTGGCTTCACGCCTGGCCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3782451‑3782604 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggcgATATTGGGCAGCACATGCTGGCGCAGCCGCGCCCAGCGTGAAGCGCCGGCCAGGCGTGAAGCCAATACGTATTCGCGGCCGCGCTGGGCAATCACCAGGCCGCGCACCATGCGCGCATACCAGGCCCAGTGGGACAGGGCGATGG  <  NC_002947/3782647‑3782503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.