New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3783024 =	62 (1.100)	4 (0.080)	4/238	NT	6.8%	coding (115/771 nt)	nikD	nickel ABC transporter ATP‑binding protein
	?	NC_002947	3783131 =	53 (1.020)					coding (222/771 nt)	nikD	nickel ABC transporter ATP‑binding protein

GCGGGTTTTGCAGCACCAGGCTGGTCAGGCGACCTCTGACACTGCTTGCAGCCAGCGGCTGGCCGTCGAGCAGCAGTTGTCCTTGGGTGCGGGCGAGGCCAGGTGGTAGCAGGTCGAGCAAGCCAAGGCAGCTGAGGGATTTGCCAGAGCCGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3783180‑3783024 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccgctggcTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCAACGAGGCATCACCAGCGCGGTAGCACGGGCGCGC  >  NC_002947/3783131‑3783272                                                                                                                                                                                                                                                                                                             GCGGGTTTTGCAGCACCAGGCTGGTCAGGCGACCTCTGACACTGCTTGCAGCCAGCGGCTGGCCGTCGAGCAGCAGTTGTCCTTGGGTGCGGGCGAGGCCAGGTGGTAGCAGGTCGAGCAAGCCAAGGCAGCTGAGGGATTTGCCAGAG                                                                                                                                                        <  4:325358/149‑1        TTGCAGCACCAGGCTGGTCAGGCGACCTCTGACACTGCTTGCAGCCAGCGGCTGGCCGTCGAGCAGCAGTTGTCCTTGGGTGCGGGCGAGGCCAGGTGGTAGCAGGTCGAGCAAGCCAAGGCAGCTGAGGGATTTGCCAGAGCCGCTG                                                                                                                                                  <  3:226801/148‑1         TGCAGCACCAGGCTGGTCAGGCGACCTCTGACACTGCTTGCAGCCAGCGGCTGGCCGTCGAGCAGCAGTTGTCCTTGGGTGCGGGCGAGGCCAGGTGGTAGCAGGTCGAGCAAGCCAAGGCAGCTGAGGGATTTGCCAGAGCCGCTGG                                                                                                                                                 <  8:232479/148‑1                                                     CAGCGGCTGGCCGTCGAGCAGCAGTTGTCCTTGGGTGCGGGCGAGGCCAGGTGGTAGCAGGTCGAGCAAGCCAAGGCAGCTGAGGGATTTGCCAGAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAA                                                                                                     >  8:233497/1‑148                                                           CTGGCCGTCGAGCAGCAGTTGTCCTTGGGTGCGGGCGAGGCCAGGTGGTAGCAGGTCGAGCAAGCCAAGGCAGCTGAGGGATTTGCCAGAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGA                                                                                                                      <  1:337877/125‑1                                                           CTGGCCGTCGAGCAGCAGTTGTCCTTGGGTGCGGGCGAGGCCAGGTGGTAGCAGGTCGAGCAAGCCAAGGCAGCTGAGGGATTTGCCAGAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGA                                                                                                                      >  2:337877/1‑125                                                                                                   CCAGGTGGTAGCAGGTCGAGCAAGCCAAGGCAGCTGAGGGATTTGCCAGAGCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGAGCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGC                                                      <  7:233497/149‑1                                                                                                                                                     GCCGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCAACGAGGCATCACCAGCGCGGTAGCACGGGCGC    <  7:324715/149‑1                                                                                                                                                       CGCTGGCTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCTATCGAAACGCTCAGGCAACGAGGCATCACCAGCGCGGTAGCACGGGCGCGC  <  1:269423/149‑1                                                                                                                                                                                                                                                                                                             GCGGGTTTTGCAGCACCAGGCTGGTCAGGCGACCTCTGACACTGCTTGCAGCCAGCGGCTGGCCGTCGAGCAGCAGTTGTCCTTGGGTGCGGGCGAGGCCAGGTGGTAGCAGGTCGAGCAAGCCAAGGCAGCTGAGGGATTTGCCAGAGCCGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3783180‑3783024 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccgctggcTGCAAGCAGTGTCAGAGGTCGCCTGACCAGCCTGGTGCTGCAAAACCCGCGCAGCGCCTTCAACCCGGTGCGCAACATGGCCAGCCATGCCATCGAAACGCTCAGGCAACGAGGCATCACCAGCGCGGTAGCACGGGCGCGC  >  NC_002947/3783131‑3783272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.