| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3849459 = | 29 (0.510) | 4 (0.070) | 4/250 | NT | 11.6% | coding (1224/2268 nt) | PP_3397 | hypothetical protein |
| ? | NC_002947 | 3849493 = | 33 (0.600) | coding (1258/2268 nt) | PP_3397 | hypothetical protein | |||||
CTGCCGACCACGATCACCGGCTCCACATCACTACCGCCATGGGCAGACTTGACCGTAACGGTAGCGGGCGGTTGAGCCAAATCGTTGACCGTGATGCTTTGCAGCGTGCCCGATTTCGACATGCGGCCGTAGCCTTGGGCGAGCAGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3849608‑3849459‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACC > NC_002947/3849493‑3849638 CTGCCGACCACGATCACCGGCTCCACATCACTACCGCCATGGGCAGACTTGACCGTAACGGTAGCGGGCGGTTGAGCCAAATCGTTGACCGTGATGCTTTGCAGCGTGCCCGATTTCGACATGCGGCCGTAGCCTTGGGCGAGCAGGTC < 4:296515/149‑1 TGCCGACCACGATCACCGGCTCCACATCACTACCGCCATGGGCAGACTTGACCGTAACGGTAGCGGGCGGTTGAGCCAAATCGTTGACCGTGATGCTTTGCAGCGTGCCCGATTTCGACATGCGGCCGTAGCCTTGGGCGAGCAGGTCG > 3:163871/1‑149 CGATTTCGACATGCGGCCGTAGCCTTGGGCGAGCAGGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTA > 5:349736/1‑125 CGATTTCGACATGCGGCCGTAGCCTTGGGCGAGCAGGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTA < 6:349736/125‑1 TTTCGACATGCGGCCGTAGCCTTGGGCGAGCAGGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGG < 5:133533/120‑1 TTTCGACATGCGGCCGTAGCCTTGGGCGAGCAGGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGG > 6:133533/1‑120 GTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCAC > 6:311461/1‑149 TCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACC > 3:45033/1‑149 CTGCCGACCACGATCACCGGCTCCACATCACTACCGCCATGGGCAGACTTGACCGTAACGGTAGCGGGCGGTTGAGCCAAATCGTTGACCGTGATGCTTTGCAGCGTGCCCGATTTCGACATGCGGCCGTAGCCTTGGGCGAGCAGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3849608‑3849459‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACC > NC_002947/3849493‑3849638 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |