New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3849459 =	29 (0.510)	4 (0.070)	4/250	NT	11.6%	coding (1224/2268 nt)	PP_3397	hypothetical protein
	?	NC_002947	3849493 =	33 (0.600)					coding (1258/2268 nt)	PP_3397	hypothetical protein

TCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACC  >  NC_002947/3849353‑3849638                                                                                                                                             |                                                                                                                                                  tctcGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCggg                                                                                                                                            >  1:373/1‑148 (MQ=255)                      taccgccatgggcagacttgaccgtaacggtagcgggcggttgagccaaatcgttgaccgtgatgctttgcagcgtgcccgatttCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCg                                                                                                                                              >  5:349736‑M1/86‑125 (MQ=255)                      taccgccatgggcagacttgaccgtaacggtagcgggcggttgagccaaatcgttgaccgtgatgctttgcagcgtgcccgatttCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCg                                                                                                                                              <  6:349736‑M1/40‑1 (MQ=255)                        gTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCaa                                                                                                                    >  3:199638/1‑149 (MQ=255)                        ccgccatgggcagacttgaccgtaacggtagcgggcggttgagccaaatcgttgaccgtgatgctttgcagcgtgcccgatttCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGaaa                                                                                                                                                 <  5:133533‑M1/37‑1 (MQ=255)                        ccgccatgggcagacttgaccgtaacggtagcgggcggttgagccaaatcgttgaccgtgatgctttgcagcgtgcccgatttCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGaaa                                                                                                                                                 >  6:133533‑M1/84‑120 (MQ=255)                             aGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGATACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGAtt                                                                                                               <  1:93526/149‑1 (MQ=255)                              gTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGAttt                                                                                                              <  2:373/149‑1 (MQ=255)                                 aGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTgg                                                                                                            <  4:199638/148‑1 (MQ=255)                                 aGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGc                                                                                                           >  5:290627/1‑149 (MQ=255)                                      cGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAAc                                                                                                      >  4:352317/1‑149 (MQ=255)                                         aCGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGATCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAAccgc                                                                                                   >  6:288203/1‑149 (MQ=255)                                                 aCTCGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTAcc                                                                                           <  6:230678/149‑1 (MQ=255)                                                  cTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAATGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTAcc                                                                                           <  4:222962/148‑1 (MQ=255)                                                     ggCCAACAAACGTCTGTTGATCGAGGCCCGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAGGCATCACGGTCAACGATTTGGCTCACCCGCCCGCTCCCGttc                                                                                       >  8:105526/1‑148 (MQ=255)                                                                      tGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGccc                                                                        >  7:31400/1‑147 (MQ=255)                                                                               ccAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCAAGGCgggata                                                             <  8:31400/149‑5 (MQ=255)                                                                                  gCTCCAGCGACGAAGTACCGGTGCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTTCCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGAt                                                          <  8:152768/149‑1 (MQ=255)                                                                                      cAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGAtgtg                                                       >  2:64989/1‑148 (MQ=255)                                                                                           acgaAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCg                                                 >  4:309904/1‑149 (MQ=255)                                                                                            cgaAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCgg                                                <  3:309904/149‑1 (MQ=255)                                                                                              aaGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATgg                                                                    <  4:54235/127‑1 (MQ=255)                                                                                              aaGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATgg                                                                    >  3:54235/1‑127 (MQ=255)                                                                                                 tAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATc                                           <  5:288203/149‑1 (MQ=255)                                                                                                    cGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTg                                        <  1:91720/149‑1 (MQ=255)                                                                                                    cGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTg                                        <  6:290627/149‑1 (MQ=255)                                                                                                     ggTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTgg                                       >  8:231050/1‑149 (MQ=255)                                                                                                     ggTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTgg                                       <  3:352317/149‑1 (MQ=255)                                                                                                     cgatttcgacatgcggccgtagccttgggcgagcaggtcgAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTa                                                               <  6:349736‑M2/85‑1 (MQ=255)                                                                                                     cgatttcgacatgcggccgtagccttgggcgagcaggtcgAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTa                                                               >  5:349736‑M2/41‑125 (MQ=255)                                                                                                      gTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTa                                                               >  4:257411/1‑124 (MQ=255)                                                                                                      gTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTa                                                               <  3:257411/124‑1 (MQ=255)                                                                                                       tCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTc                                     >  4:194739/1‑149 (MQ=255)                                                                                                        tttcgacatgcggccgtagccttgggcgagcaggtcgAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCgg                                                                 >  6:133533‑M2/38‑120 (MQ=255)                                                                                                        tttcgacatgcggccgtagccttgggcgagcaggtcgAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCgg                                                                 <  5:133533‑M2/83‑1 (MQ=255)                                                                                                          ccGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCgg                                   >  4:278677/1‑148 (MQ=255)                                                                                                           CGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCa                                 >  3:163871‑M1/1‑149 (MQ=255)                                                                                                            GACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAg                                <  4:296515‑M1/149‑1 (MQ=255)                                                                                                                   tCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCg                         >  6:256277/1‑149 (MQ=255)                                                                                                                       ccAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTc                      >  4:10881/1‑148 (MQ=255)                                                                                                                         aaGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAg                   <  1:64989/149‑1 (MQ=255)                                                                                                                          aGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAgg                  <  7:231050/149‑1 (MQ=255)                                                                                                                                cGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGgccgcc             <  3:180510/148‑1 (MQ=255)                                                                                                                                     gCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAg       >  4:126743/1‑149 (MQ=255)                                                                                                                                         gtcgAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCAc   >  6:311461‑M2/5‑149 (MQ=255)                                                                                                                                          tcgAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCAcc  >  3:45033‑M2/4‑149 (MQ=255)                                                                                                                                             aaaTCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCAc   >  2:6671/1‑145 (MQ=255)                                                                                                                                             aaaTCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCAc   <  1:6671/145‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                  TCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACC  >  NC_002947/3849353‑3849638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.