| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3849545 = | 41 (0.730) | 3 (0.060) | 3/246 | NT | 7.3% | coding (1310/2268 nt) | PP_3397 | hypothetical protein |
| ? | NC_002947 | 3849579 = | 37 (0.690) | coding (1344/2268 nt) | PP_3397 | hypothetical protein | |||||
TGCCAACATCGGCCTGGGCCAGCGGTGGCTGGTTGGCGGCCTCGACCGGGGCGCTGCCGACCACGATCACCGGCTCCACATCACTACCGCCATGGGCAGACTTGACCGTAACGGTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3849661‑3849545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtagTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATCACACTCAACCTGCTGCTGAACGACAGCGACCCGGATGG > NC_002947/3849579‑3849722 TGCCAACATCGGCCTGGGCCAGCGGTGGCTGGTTGGCGGCCTCGACCGGGGCGCTGCCGACCACGATCACCGGCTCCACATCACTACCGCCATGGGCAGACTTGACCGTAACGGTA < 5:61888/116‑1TGCCAACATCGGCCTGGGCCAGCGGTGGCTGGTTGGCGGCCTCGACCGGGGCGCTGCCGACCACGATCACCGGCTCCACATCACTACCGCCATGGGCAGACTTGACCGTAACGGTA > 6:61888/1‑116 ATCACTACCGCCATGGGCAGACTTGACCGTAACGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATCACACT > 8:201254/1‑149 CACTACCGCCATGGGCAGACTTGACCGTAACGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTG < 3:181727/116‑1 CACTACCGCCATGGGCAGACTTGACCGTAACGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTG > 4:181727/1‑116 GGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATCACACTCAACCTGCTGCTGAACGACAGCGACCCGGATGG > 4:191142/1‑149 TGCCAACATCGGCCTGGGCCAGCGGTGGCTGGTTGGCGGCCTCGACCGGGGCGCTGCCGACCACGATCACCGGCTCCACATCACTACCGCCATGGGCAGACTTGACCGTAACGGTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3849661‑3849545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtagTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATCACACTCAACCTGCTGCTGAACGACAGCGACCCGGATGG > NC_002947/3849579‑3849722 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |