New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3849545 =	41 (0.730)	3 (0.060)	3/246	NT	7.3%	coding (1310/2268 nt)	PP_3397	hypothetical protein
	?	NC_002947	3849579 =	37 (0.690)					coding (1344/2268 nt)	PP_3397	hypothetical protein

GCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATCACACTCAACCTGCTGCTGAACGACAGCGACCCGGATGG  >  NC_002947/3849434‑3849722                                                                                                                                                  |                                                                                                                                                gCTCCAGCGACGAAGTACCGGTGCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTTCCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGAt                                                                                                                                              <  8:152768/149‑1 (MQ=255) agtgtgatcggtacaccgacactagtgctgccaacatcggcctgggccagcggtggctggttggcggcctcgaccggggcgctgccgaccacgatcaccggctccacatcaCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGAt                                                                                                                                              >  8:201254‑M1/112‑149 (MQ=255)     cAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGAtgtg                                                                                                                                           >  2:64989/1‑148 (MQ=255)          acgaAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCg                                                                                                                                     >  4:309904/1‑149 (MQ=255)           cgaAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCgg                                                                                                                                    <  3:309904/149‑1 (MQ=255)                tAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATc                                                                                                                               <  5:288203/149‑1 (MQ=255)                   cGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTg                                                                                                                            <  1:91720/149‑1 (MQ=255)                   cGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTg                                                                                                                            <  6:290627/149‑1 (MQ=255)                    ggTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTgg                                                                                                                           <  3:352317/149‑1 (MQ=255)                    ggTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTgg                                                                                                                           >  8:231050/1‑149 (MQ=255)                      tCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTc                                                                                                                         >  4:194739/1‑149 (MQ=255)                         ccGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCgg                                                                                                                       >  4:278677/1‑148 (MQ=255)                          CGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCa                                                                                                                     >  3:163871‑M1/1‑149 (MQ=255)                           GACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAg                                                                                                                    <  4:296515‑M1/149‑1 (MQ=255)                                caacatcggcctgggccagcggtggctggttggcggcctcgaccggggcgctgccgaccacgatcaccggctccacatcaCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTg                                                                                                                                                <  3:181727‑M1/36‑1 (MQ=255)                                caacatcggcctgggccagcggtggctggttggcggcctcgaccggggcgctgccgaccacgatcaccggctccacatcaCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTg                                                                                                                                                >  4:181727‑M1/81‑116 (MQ=255)                                  tCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCg                                                                                                             >  6:256277/1‑149 (MQ=255)                                      ccAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTc                                                                                                          >  4:10881/1‑148 (MQ=255)                                        aaGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAg                                                                                                       <  1:64989/149‑1 (MQ=255)                                         aGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAgg                                                                                                      <  7:231050/149‑1 (MQ=255)                                               cGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGgccgcc                                                                                                 <  3:180510/148‑1 (MQ=255)                                                    gCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAg                                                                                           >  4:126743/1‑149 (MQ=255)                                                        gtcgAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCAc                                                                                       >  6:311461‑M2/5‑149 (MQ=255)                                                         tcgAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCAcc                                                                                      >  3:45033‑M2/4‑149 (MQ=255)                                                            aaaTCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCAc                                                                                       <  1:6671/145‑1 (MQ=255)                                                            aaaTCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCAc                                                                                       >  2:6671/1‑145 (MQ=255)                                                              aTCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTgg                                                                                 <  3:296515/149‑1 (MQ=255)                                                               tCGGGCACGCTGCAACGCATCACGGTCAACGATTTGGCGCAACCGCCCGCTACCGTGACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGGGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGc                                                                                <  7:105526/149‑1 (MQ=255)                                                                    cACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAgg                                                                           <  3:194739/149‑1 (MQ=255)                                                                          gCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATg                                                                     >  4:41349/1‑149 (MQ=255)                                                                               gCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGgc                                                                <  3:278677/149‑1 (MQ=255)                                                                                      ggTCCACGATTTGGCTCAACAGCCCGCTTCCTTTACGGTCAATTCTCGCGATGTCTGTTGTGATGGTGAGCCGTTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCATCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTa                                                         <  6:93246/149‑1 (MQ=255)                                                                                      ggTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTa                                                         <  4:45033/149‑1 (MQ=255)                                                                                      ggTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTa                                                         <  3:126743/149‑1 (MQ=255)                                                                                        tCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAgt                                                       >  6:20894/1‑149 (MQ=255)                                                                                          aaCGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAgtgt                                                     >  2:231990/1‑149 (MQ=255)                                                                                             gATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCgg                                                  >  6:184691/1‑149 (MQ=255)                                                                                                     tCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGa                                          >  4:14599/1‑149 (MQ=255)                                                                                                        aCCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATca                                       <  3:14599/149‑1 (MQ=255)                                                                                                          cgcccgcTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATcaca                                     <  5:311461/149‑1 (MQ=255)                                                                                                          cgcccgcTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATcaca                                     <  5:184691/149‑1 (MQ=255)                                                                                                            cccgcTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATc                                        >  6:146253/1‑144 (MQ=255)                                                                                                            cccgcTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATc                                        <  5:146253/144‑1 (MQ=255)                                                                                                            atcactaccgccatgggcagacttgaccgtaacggtagTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATCACACt                                   >  8:201254‑M2/39‑149 (MQ=255)                                                                                                              cactaccgccatgggcagacttgaccgtaacggtagTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTg                                                                  <  3:181727‑M2/80‑1 (MQ=255)                                                                                                              cactaccgccatgggcagacttgaccgtaacggtagTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTg                                                                  >  4:181727‑M2/37‑116 (MQ=255)                                                                                                                 TACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGgca                                                               >  6:61888‑M1/1‑116 (MQ=255)                                                                                                                 TACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGgca                                                               <  5:61888‑M1/116‑1 (MQ=255)                                                                                                                                 tCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATCACACTCAACCTGCTGCTGAACGACAg              <  5:20894/149‑1 (MQ=255)                                                                                                                                      ccATGGCGGTAGTCATGTCGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCATCCAACCAGCCACCGCTGACCAAGGCCGATGTTGGCAGCACTAGATTCGGTGTAACGAACAAACTCAACCTGCTGCTGAACGACAGCGAca         >  4:235544/1‑148 (MQ=255)                                                                                                                                           gCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATCACACTCAACCTGCTGCTGAACGACAGCGACCCGGAt    <  3:10881/149‑1 (MQ=255)                                                                                                                                             ggtagTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATCACACTCAACCTGCTGCTGAACGACAGCGACCCGGATgg  >  4:191142‑M2/6‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                GCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCTGGCCCAGGCCGATGTTGGCAGCACTAGTGTCGGTGTACCGATCACACTCAACCTGCTGCTGAACGACAGCGACCCGGATGG  >  NC_002947/3849434‑3849722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.