| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3974302 = | 41 (0.730) | 5 (0.090) | 5/246 | NT | 10.1% | coding (171/1326 nt) | PP_3503 | sigma‑54 dependent transcriptional regulator |
| ? | NC_002947 | 3974339 = | 50 (0.930) | coding (134/1326 nt) | PP_3503 | sigma‑54 dependent transcriptional regulator | |||||
AACGCCGTTTGCTTATCGTCGACCCCTGCGACGATTGCCACCGCTTGTTACCTGGCCTGCGCAACGCAGGCTGGGATGTGGACAGCTGTATGCTCGGGGCTGCGCTGGACCACACGTGCGATGTCGGGCTATTGCGCTTGCAGGCTTCGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3974453‑3974302‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcacGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGC > NC_002947/3974339‑3974486 AACGCCGTTTGCTTATCGTCGACCCATGCGACGATTGCCACCGCTTGTTACCTGGCCTGCGCAACGCAGGCTGGGATGTGGACAGCTGTATGCTCGGGGCTGCGCTGGACCACACGTGCGATGTCGGGCTATTGCGCTTGCAGGCTTCG > 4:35964/1‑149 ACACGTGCGATGTCGGGCTATTGCGCTTGCAGGCTTCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAA > 5:275236/1‑149 CACGTGCGATGTCGGGCTATTGCGCTTGCAGGCTTCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAAC > 3:39301/1‑149 GTGCGATGTCGGGCTATTGCGCTTGCAGGCTTCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGC > 1:80585/1‑149 TGTCGGGCTATTGCGCTTGCAGGCTTCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAG < 4:39301/149‑1 TTGCGCTTGCAGGCTTCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGC < 2:80585/147‑1 ACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGG < 1:132289/149‑1 CGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGTCGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGC < 1:90121/149‑1 AACGCCGTTTGCTTATCGTCGACCCCTGCGACGATTGCCACCGCTTGTTACCTGGCCTGCGCAACGCAGGCTGGGATGTGGACAGCTGTATGCTCGGGGCTGCGCTGGACCACACGTGCGATGTCGGGCTATTGCGCTTGCAGGCTTCGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3974453‑3974302‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcacGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGC > NC_002947/3974339‑3974486 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |