New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3974302 =	41 (0.730)	5 (0.090)	5/246	NT	10.1%	coding (171/1326 nt)	PP_3503	sigma‑54 dependent transcriptional regulator
	?	NC_002947	3974339 =	50 (0.930)					coding (134/1326 nt)	PP_3503	sigma‑54 dependent transcriptional regulator

ACACAAAATCACCGAACGCCGGCATGCGCAACTGATCGGCGCTGAGCACGGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGC  >  NC_002947/3974193‑3974486                                                                                                                                                   |                                                                                                                                                    gtttgcttatcgtcgacccctgcgacgattgccaccgcttgttacctggcctgcgcaacgcaggctgggatgtggacagctgtatgctcggggctgcgctggaccacacGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACgtg                                                                                                                                                   >  3:39301‑M1/110‑149 (MQ=255) acacaAAATCACCGAACGCCGGCATGCGCAACTGATCGGCGCTGAGCACGGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACgtg                                                                                                                                                   >  6:2512/1‑149 (MQ=255)  tttgcttatcgtcgacccctgcgacgattgccaccgcttgttacctggcctgcgcaacgcaggctgggatgtggacagctgtatgctcggggctgcgctggaccacacGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACgtgt                                                                                                                                                  >  5:275236‑M1/109‑149 (MQ=255)  cacaAAATCACCGAACGCCGGCATGCGCAACTGATCGGCGCTGAGCACGGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACgtgt                                                                                                                                                  <  1:362152/149‑1 (MQ=255)         tCACCGAACGCCGGCATGCGCAACTGATCGGCGCTGAGCACGGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAg                                                                                                                                           >  6:49911/1‑149 (MQ=255)                            gcAACTGATCGGCGCTGAGCACGGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAg                                                                                                                        <  5:2512/149‑1 (MQ=255)                            gcAACTGATCGGCGCTGAGCACGGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAg                                                                                                                        >  3:292559/1‑149 (MQ=255)                            gcAACTGATCGGCGCTGAGCACGGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAg                                                                                                                        >  2:298853/1‑149 (MQ=255)                                   aTCGGCGCTGAGCACGGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTc                                                                                                                   <  3:341777/147‑1 (MQ=255)                                   aTCGGCGCTGAGCACGGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCca                                                                                                                 >  7:247984/1‑149 (MQ=255)                                      ggCGCTGAGCACGGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACAt                                                                                                              >  2:132289/1‑149 (MQ=255)                                          cTGAGCACGGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCca                                                                                                                 >  4:246213/1‑142 (MQ=255)                                          cTGAGCACGGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCca                                                                                                                 <  3:246213/142‑1 (MQ=255)                                          cTGAGCACGGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCa                                                                                                          <  8:247984/149‑1 (MQ=255)                                          cTGAGCACGGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCa                                                                                                          <  3:276886/149‑1 (MQ=255)                                                aCGGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGc                                                                                                    >  3:139005/1‑149 (MQ=255)                                                   gCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGTTGTCCACATCCCAGCCTGCGtt                                                                                                 <  4:292559/149‑1 (MQ=255)                                                       tCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTgcg                                                                                              >  6:326570/1‑148 (MQ=255)                                                       tCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTgcg                                                                                              >  3:35964/1‑148 (MQ=255)                                                         cATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCa                                                                                            <  5:49911/148‑1 (MQ=255)                                                           ttCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGc                                                                                         >  7:14211/1‑149 (MQ=255)                                                               gtgtTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAgg                                                                                     >  8:243233/1‑149 (MQ=255)                                                                      tgcGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAg                                                                              >  6:301052/1‑149 (MQ=255)                                                                      tgcGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAg                                                                              >  1:297463/1‑149 (MQ=255)                                                                        cgcTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCg                                                                            <  7:243233/149‑1 (MQ=255)                                                                                 aTGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAAtc                                                                   <  8:14211/149‑1 (MQ=255)                                                                                   gTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAAtcgt                                                                 >  7:206472/1‑149 (MQ=255)                                                                                    acattGACCGAGTCCGCGTGCCTCACGAGCGAAGCATTCAACCGCAATATCCAGACAACGCACGTGTCGAACAGCGAAGAACCGAGCATACAGCTGAACACATACCAGCATGCGTTGCGCAGGCCAGGTAACAAGCTGAGCCAAtcgtc                                                                >  8:104542/4‑149 (MQ=255)                                                                                     ccTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAAtcgtcg                                                               >  7:167335/1‑149 (MQ=255)                                                                                     ccTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAAtcgtcg                                                               >  1:133971/1‑149 (MQ=255)                                                                                      cTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAAtcgtcg                                                               <  5:301052/148‑1 (MQ=255)                                                                                       ttGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAAtcgtcg                                                               >  2:120568/1‑147 (MQ=255)                                                                                       ttGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAAtcgtcg                                                               >  3:342449/1‑147 (MQ=255)                                                                                       ttGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAAtcgtcg                                                               >  2:90121/1‑147 (MQ=255)                                                                                         gACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAg                                                            <  1:298853/148‑1 (MQ=255)                                                                                          aCCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAggg                                                          <  4:342449/149‑1 (MQ=255)                                                                                                  cGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTcga                                                     <  2:224404/146‑1 (MQ=255)                                                                                                  cGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTcga                                                     >  1:224404/1‑146 (MQ=255)                                                                                                        ccTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGc                                             <  7:104542/148‑1 (MQ=255)                                                                                                          tCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCCGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCaaa                                          >  2:276715/1‑149 (MQ=255)                                                                                                          tCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGc                                                                                         >  6:27707/1‑102 (MQ=255)                                                                                                          tCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGc                                                                                         <  5:27707/102‑1 (MQ=255)                                                                                                          tCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCaaa                                          >  8:309748/1‑149 (MQ=255)                                                                                                          acacgtgcgatgtcgggctattgcgcttgcaggcttcgcacGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCaaa                                          >  5:275236‑M2/42‑149 (MQ=255)                                                                                                           cacgtgcgatgtcgggctattgcgcttgcaggcttcgcacGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAAc                                         >  3:39301‑M2/41‑149 (MQ=255)                                                                                                              gtgcgatgtcgggctattgcgcttgcaggcttcgcacGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGc                                      >  1:80585‑M2/38‑149 (MQ=255)                                                                                                                 CGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCATGGGTCGACGATAAGCAAACGGCGtt                                   >  4:35964‑M1/1‑149 (MQ=255)                                                                                                                    tgtcgggctattgcgcttgcaggcttcgcacGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAg                                <  4:39301‑M2/118‑1 (MQ=255)                                                                                                                    aGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAg                                >  7:279100/1‑149 (MQ=255)                                                                                                                     gCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGc                               >  2:328007/1‑149 (MQ=255)                                                                                                                             gcgcAATAGCCCGACATCGGACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCg                              <  7:328652/142‑1 (MQ=255)                                                                                                                             gcgcAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGgct                       >  3:36894/1‑149 (MQ=255)                                                                                                                             gcgcAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGGCGACGCTAAGCACACGGCGTGGAGCg                              >  8:328652/1‑142 (MQ=255)                                                                                                                              ttgcgcttgcaggcttcgcacGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGgc                        <  2:80585‑M2/126‑1 (MQ=255)                                                                                                                              cgcAATAGCCCGACATCGCACGTGTGGTCCATCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCa                                                                                            <  4:98525/79‑1 (MQ=255)                                                                                                                              cgcAATAGCCCGACATCGCAAGTGTGGTCAAGCGCAGACCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCa                                                                                            >  3:98525/1‑79 (MQ=255)                                                                                                                               gcAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGgctgc                     >  2:224841/1‑149 (MQ=255)                                                                                                                               gcAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCAAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGCCGATAAGCAAACGGCGTTGAGCGGCAGgctgc                     >  6:238973/1‑149 (MQ=255)                                                                                                                                   tAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCa                 <  1:328007/149‑1 (MQ=255)                                                                                                                                      cccGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGa              >  8:74932/1‑149 (MQ=255)                                                                                                                                         gACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGCAACGCAGGctgg                                                                                      >  3:191223/1‑71 (MQ=38)                                                                                                                                         gACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGCAACGCAGGctgg                                                                                      <  4:191223/74‑4 (MQ=38)                                                                                                                                                 acGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTgg   <  1:132289‑M2/147‑1 (MQ=255)                                                                                                                                                  cGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGTCGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGc  <  1:90121‑M2/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    ACACAAAATCACCGAACGCCGGCATGCGCAACTGATCGGCGCTGAGCACGGCAATCCATTCGGTGTTGCTGCGCTTGATCATGTCCTTGACCGCGTCCGGGTGCCTCAGGTGCGAAGCCTGCAAGCGCAATAGCCCGACATCGCACGTGTGGTCCAGCGCAGCCCCGAGCATACAGCTGTCCACATCCCAGCCTGCGTTGCGCAGGCCAGGTAACAAGCGGTGGCAATCGTCGCAGGGGTCGACGATAAGCAAACGGCGTTGAGCGGCAGGCTGCTGCATGACCGATCCTTGGC  >  NC_002947/3974193‑3974486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.