New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4059125 | 49 (0.870) | 3 (0.060) | 3/246 | NT | 5.8% | coding (58/513 nt) | fecI | RNA polymerase sigma 19 factor |
? | NC_002947 | = 4059167 | 50 (0.930) | coding (16/513 nt) | fecI | RNA polymerase sigma 19 factor |
GCCCACAGTCAGCAGGTAGGCACGCGGTTCGCGTATGTCTGCCAGCGGCTGGGCGCTGGCCAGAATGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4058976‑4059125 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcgCCGCCACCGGAGCCTGGCCTGCCTGCCCTGTACCGGGAGCATCGCGGCTGGCTTGAAGCCTGGCTGCGCCGGCGTATGGGCAATGCCTGGGATGCCGCCGACCTCAGCCAGGATACTTTTCTGCGCATTCTGGCCAGCGCCCAGCCGC < NC_002947/4059167‑4059020 GCCCACAGTCAGCAGGTAGGCACGCGGTTCGCGTATGTCTGCCAGCGGCTGGGCGCTGGCCAGAATGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCG < 5:33939/148‑1 CCCACAGTCAGCAGGTAGGCACGCGGTTCGCGTATGTCTGCCAGCGGCTGGGCGCTGGCCAGAATGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCG < 6:135680/149‑1 CCACAGTCAGCAGGTAGGCACGCGGTTCGCGTATGTCTGCCAGCGGCTGGGCGCTGGCCAGAATGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGC > 4:17397/1‑149 TGCCAGCGGCTGGGCGCTGGCCAGAATGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGCCGCCACCGGAGCCTGGCCTGCCTGCCCTGTACCGG > 6:333738/1‑147 GCTGGGCGCTGGCCAGAATGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGCCGCCACCGGAGCCTGGCCTGCCTGCCCTGTACCGGGAGCATCGCG < 3:17397/149‑1 GGCGCTGGCCAGAATGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGCCGCCACCGGAGCCTGGCCTGCCTGCCCTGTACCGGGAGCATCGCGGCT < 5:333738/148‑1 CGCGCCGCCACCGGAGCCTGGCCTGCCTGCCCTGTACCGGGAGCATCGCGGCTGGCTTGAAGCCTGGCTGCGCCGGCGTATGGGCAATGCCTGGGATGCCGCCGACCTCAGCCAGGATACTTTTCTGCGCATTCTGGCCAGCGCCCAGC > 1:8042/1‑149 GCCGCCACCGGAGCCTGGCCTGCCTGCCCTGTACCGGGAGCATCGCGGCTGGCTTGAAGCCTGGCTGCGCCGGCGTATGGGCAATGCCTGGGATGCCGCCGACCTCAGCCAGGATACTTTTCTGCGCATTCTGGCCAGCGCCCAGCCGC < 6:43626/149‑1 GCCCACAGTCAGCAGGTAGGCACGCGGTTCGCGTATGTCTGCCAGCGGCTGGGCGCTGGCCAGAATGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4058976‑4059125 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcgCCGCCACCGGAGCCTGGCCTGCCTGCCCTGTACCGGGAGCATCGCGGCTGGCTTGAAGCCTGGCTGCGCCGGCGTATGGGCAATGCCTGGGATGCCGCCGACCTCAGCCAGGATACTTTTCTGCGCATTCTGGCCAGCGCCCAGCCGC < NC_002947/4059167‑4059020 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |