New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4059125 | 49 (0.870) | 3 (0.060) | 3/246 | NT | 5.8% | coding (58/513 nt) | fecI | RNA polymerase sigma 19 factor |
? | NC_002947 | = 4059167 | 50 (0.930) | coding (16/513 nt) | fecI | RNA polymerase sigma 19 factor |
GCGGCTGGGCGCTGGCCAGAATGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAA > NC_002947/4059020‑4059314 | gCGGCTGGGCGCTGGCCAGAATGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGc < 6:43626‑M2/149‑2 (MQ=255) gCTGGGCGCTGGCCAGAATGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGcgcg > 1:8042‑M2/1‑145 (MQ=255) gggCGCTGGCCAGAATGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGcggcgc‑ggcg > 7:185117/1‑149 (MQ=255) tGGCCAGAATGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGAt > 4:49380/1‑148 (MQ=255) gCCAGAATGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATc < 5:43626/147‑1 (MQ=255) gCCAGAATGCGCAGAAAAGTATCCTGGCGGAGGGCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATc < 7:255019/147‑1 (MQ=255) cAGAATGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCAt > 7:156127/1‑147 (MQ=255) tGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGGCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGGGTGGATCATGaggagg < 2:357384/149‑1 (MQ=255) tGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGaggagg < 7:85387/149‑1 (MQ=255) cgcAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAggg < 5:273899/148‑1 (MQ=255) aGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCAt < 5:209308/137‑1 (MQ=255) aGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCAt > 6:209308/1‑137 (MQ=255) aGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCt < 8:185117/149‑1 (MQ=255) aGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCt > 7:229034/1‑149 (MQ=255) gTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTgcggcg < 7:281499/149‑1 (MQ=255) tCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGgaggag > 6:223826/1‑149 (MQ=255) tCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGa < 1:170795/148‑1 (MQ=255) tGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAAt > 6:137880/1‑147 (MQ=255) tGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAAt > 7:297267/1‑147 (MQ=255) ggTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGAt < 8:229034/149‑1 (MQ=255) tCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGa > 5:248379/1‑136 (MQ=255) tCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGa < 6:248379/136‑1 (MQ=255) gcggcATCCCAGTCATTGACCATTCGCCGGCGCAGCCAGGCTTCAAGCCAGCCGAGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAAtt < 6:16149/149‑1 (MQ=255) cAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGTTGCTCCCGGTACAGGGCAGGCAGGCCAGGCGCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATACGATTAATTCTAATTTa > 2:246773/1‑148 (MQ=255) aGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACa < 5:18483/149‑1 (MQ=255) ccATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCAcacca > 7:98506/1‑148 (MQ=255) aTACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCATGCAGTCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAg < 8:312024/149‑1 (MQ=255) cGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAAc < 3:49380/149‑1 (MQ=255) cGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGaa < 8:11466/145‑1 (MQ=255) cGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGaa > 7:11466/1‑145 (MQ=255) ggCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAg < 4:145001/149‑1 (MQ=255) gcAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGTGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCgg < 8:156127/149‑1 (MQ=255) gcAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCgg > 5:123517/1‑149 (MQ=255) ccAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTg > 3:30829/1‑149 (MQ=255) aGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGt > 3:46055/1‑148 (MQ=255) agccagccGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCa < 4:30829/149‑1 (MQ=255) cagccGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCAAATTTACATAACACCACAGAACCAAGCGGTATGTTAACGGTCAgg > 3:296163/1‑148 (MQ=255) agccGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGcgcggctggcttgaagcctggctgcgccggcgtatgggcaatgcctgggatgccgccgacctcagccaggatacttttctgcgcattctggccagcgcc < 5:333738‑M2/148‑100 (MQ=255) ccGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAAt < 2:82304/149‑1 (MQ=255) cgcgATGCTCCCGGTACATGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGt < 7:157337/129‑1 (MQ=255) cgcgATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGcgcggctggcttgaagcctggctgcgccggcgtatgggcaatgcctgggatgccgccgacctcagccaggatacttttctgcgcattctggccagcgcccagc < 3:17397‑M2/149‑104 (MQ=255) cgcgATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGt > 8:157337/1‑129 (MQ=255) gcgATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGCAGGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATg > 1:85243/1‑149 (MQ=255) gATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCt < 4:46055/149‑1 (MQ=255) tCCCGGTACAGGGCAGGCAGGCCATGCTCCTGTGGCTGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGATTAAATAAGATTAATTCTAATTTAGATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAgg < 4:66794/136‑1 (MQ=255) tCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAgg > 3:66794/1‑136 (MQ=255) ccGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGcgcggctggcttgaagcctggctgcgccggcgtatgggcaatgcctgggatgccgccgacctcagccaggatacttttctgcgcattctggccagcgcccagccgctggca > 6:333738‑M2/1‑36 (MQ=255) ggTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGAcc < 6:123517/149‑1 (MQ=255) aGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCAc < 5:223826/149‑1 (MQ=255) caggcaggCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTtgt < 8:297267/149‑1 (MQ=255) aggcaggcCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTtgtg > 3:183531/1‑149 (MQ=255) caggcTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTtcctc > 6:12348/1‑148 (MQ=255) caggcTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTtcctc > 2:310978/1‑148 (MQ=255) cTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCGAGCGTCGGAGTAAATAAGATTAATTCTAATTTACATCACACCAAAGAACCAAGCGCTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGAGATTCATccacca > 6:324139/1‑149 (MQ=255) ggTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCGTCATCGACCAGCACTTGTGCTTCCTCCACCAGACg < 5:324139/149‑1 (MQ=255) gTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGc > 7:46153/1‑149 (MQ=255) gcggcgc‑ggcGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCCCCAGACGCTGc < 8:98506/149‑1 (MQ=255) gcgcggctggcttgaagcctggctgcgccggcgtatgggcaatgcctgggatgccgccgacctcagccaggatacttttctgcgcattctggccagcgcccagccgctggcagacatacgcgaaccgcgtgcctacctgctgactgtgg > 4:17397‑M2/1‑1 (MQ=255) | GCGGCTGGGCGCTGGCCAGAATGCGCAGAAAAGTATCCTGGCTGAGGTCGGCGGCATCCCAGGCATTGCCCATACGCCGGCGCAGCCAGGCTTCAAGCCAGCCGCGATGCTCCCGGTACAGGGCAGGCAGGCCAGGCTCCGGTGGCGGCGC‑GGCGTCGATCATGAGGAGGGTCCTGCGGCGGAGTAAATAAGATTAATTCTAATTTACATCACACCACAGAACCAAGCGGTTTGTTACCGGTCAGGCAATGGCTTCATCGACCAGCACTTGTGCTTCCTCCACCAGACGCTGCAA > NC_002947/4059020‑4059314 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |