New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4146460 | 49 (0.870) | 4 (0.080) | 4/242 | NT | 7.0% | coding (543/2184 nt) | PP_3651 | two‑component system sensor histidine kinase/response regulator |
? | NC_002947 | = 4146507 | 61 (1.150) | coding (590/2184 nt) | PP_3651 | two‑component system sensor histidine kinase/response regulator |
TGGCGAGATTCTGGGCATGCTCGACACGGTCACCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4146322‑4146460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatcaccGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATGGCCATGATCTGGTCCGGGTCGGTCGCCTCGGTCACGGCTCGCCCGAGGGTATCGAGAAAGTTCAGGCGCTGGTTGGTGACCACGCTGGCGGTG < NC_002947/4146507‑4146361 TGGCGAGATTCTGGGCATGCTCGACACGGTCACCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATC < 5:102037/136‑1 TGGCGAGATTCTGGGCATGCTCGACACGGTCACCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATC > 6:102037/1‑136 CCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCGCATAGGCGCAGCTGGACAGGCAAAGGTGCTCGACCAGCATGCGGGTGGTGATG > 5:57367/1‑149 AGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATGGC < 6:57367/149‑1 ACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATGGCCAT < 7:170181/143‑1 ACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATGGCCAT > 8:170181/1‑143 CATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATGGCCATGATCTGGTCCGGGTCGGTCGCCTCGGTCACAGCTCGCCCGAGGGTATCGAGAAAGTTCAGGCGC > 3:41139/1‑130 CATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATGGCCATGATCTGGTCCGGGTCGGTCGCCTCGGTCACAGCTCGCCCGAGGGTATCGAGAAAGTTCAGGCGC < 4:41139/130‑1 ATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATGGCCATGATCTGGTCCGGGTCGGTCGCCTCGGTCACGGCTCGCCCGAGGGTATCGAGAAAGTTCAGGCGCTGGTTGGTGACCACGCTGGC > 8:337936/1‑149 ATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATGGCCATGATCTGGTCCGGGTCGGTCGCCTCGGTCACGGCTCGCCCGAGGGTATCGAGAAAGTTCAGGCGCTGGTTGGTGACCACGCTGG < 5:118998/148‑1 ATCAACGCATAGGCGCACCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATGGCCATGATCTGGTCCGGGTCGGTCGCCTCGGTCACGGCTCGCCCGAGGGTATCGAGAAAGTTCAGGCGCATGATGATGACCACGCTGG > 6:118998/1‑148 CCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATGGCCATGATCTGGTCCGGGTCGGTCGCCTCGGTCACGGCTCGCCCGAGGGTATCGAGAAAGTTCAGGCGCTGGTTGGTGACCACGCTGGCGGTG < 7:271867/149‑1 TGGCGAGATTCTGGGCATGCTCGACACGGTCACCGAAACCACCGCCAGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4146322‑4146460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatcaccGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATGGCCATGATCTGGTCCGGGTCGGTCGCCTCGGTCACGGCTCGCCCGAGGGTATCGAGAAAGTTCAGGCGCTGGTTGGTGACCACGCTGGCGGTG < NC_002947/4146507‑4146361 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |