New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4405846	49 (0.870)	3 (0.050)	3/250	NT	6.0%	coding (370/672 nt)	PP_3887	hypothetical protein
	?	NC_002947	= 4405881	47 (0.860)					coding (335/672 nt)	PP_3887	hypothetical protein

CCTCTCGATCATGAACCATCTGTTTATGCGATTGCAGGGCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4405738‑4405846 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaACGCCAATGACCTGAGCATCGCTCACGGATTAGCGTGGCTGGGTAGCGGTCTGGACGGTCTTTCAGGTCGCAAGAAGGAACGCGCTTACTGGATGGCCATGGCTGCCCTGCAATCGCATAAACAGATGG  <  NC_002947/4405881‑4405753                                                                                                                                                                                                                                                CCTCTCGATCATGAACCATCTGTTTATGCGATTGCAGGGCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCAACGCCAATGACCTGAGCATCGCTCACGGATTAGCGTGGCT                                                                                           <  2:212841/149‑1   TCTCGATCATGAACCATCTGTTTATGCGATTGCAGGGCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCAACGCCAATGACCTGAGCATCGCTCACGGATTAGCGTGGCTGG                                                                                         >  4:260012/1‑149         TCATGAACCATCTGTTTATGCGATTGCAGGGCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCAACGCCAATGACCTGAGCATCGCTCACGGATTAGCGTGGCTGGGTAGCG                                                                                   <  3:260012/149‑1                                                                                                           CCAACGCCAATGACCTGAGCATCGCTCACGGATTAGCGTGGCTGGGTAGCGGTCTGGACGGTCTTTCAGGTCGCAAGAAGGAACGCGCTTACTGGATGGCCATGGCTGCCCTGCAATCGCATAAACAGATGG  <  1:312434/132‑1                                                                                                           CCAACGCCAATGACCTGAGCATCGCTCACGGATTAGCGTGGCTGGGTAGCGGTCTGGACGGTCTTTCAGGTCGCAAGAAGGAACGCGCTTACTGGATGGCCATGGCTGCCCTGCAATCGCATAAACAGATGG  >  2:312434/1‑132                                                                                                                                                                                                                                                CCTCTCGATCATGAACCATCTGTTTATGCGATTGCAGGGCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4405738‑4405846 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaACGCCAATGACCTGAGCATCGCTCACGGATTAGCGTGGCTGGGTAGCGGTCTGGACGGTCTTTCAGGTCGCAAGAAGGAACGCGCTTACTGGATGGCCATGGCTGCCCTGCAATCGCATAAACAGATGG  <  NC_002947/4405881‑4405753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.