New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4405846	49 (0.870)	3 (0.050)	3/250	NT	6.0%	coding (370/672 nt)	PP_3887	hypothetical protein
	?	NC_002947	= 4405881	47 (0.860)					coding (335/672 nt)	PP_3887	hypothetical protein

CCAACCCTCTCGATCATGAACCATCTGTTTATGCGATTGCAGGGCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAGCGCGCATCAGTAAGGCGGCGGCCAGAGCGGGTTTCGTGCA  >  NC_002947/4405733‑4406022                                                                                                                                                     |                                                                                                                                              ccAACCCTCTCGATCATGAACCATCTGTTTATGCGATTGCAGGGCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCAttggcgt                                                                                                                                               >  5:197728/1‑149 (MQ=255)         ctcGATCATGAACCATCTGTTTATGCGATTGCAGGGCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATc                                                                                                                                       <  4:236586/149‑1 (MQ=255)            gATCATGAACCATCTGTTTATGCGATTGCAGGGCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCg                                                                                                                                      <  6:197728/147‑1 (MQ=255)                aTGAACCATCTGTTTATGCGATTGCAGGGCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAg                                                                                                                                 <  2:175175/148‑1 (MQ=255)                 tGAACCATCTGTTTATGCGATTGCAGGGCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTa                                                                                                                               >  7:208464/1‑149 (MQ=255)                 tGAACCATCTGTTTATGCGATTGCAGGGCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGAGACCAGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGCCGTAGGCGATCGGCGAga                                                                                                                                >  5:47566/1‑147 (MQ=255)                     ccATCTGTTTATGCGATTGCAGGGCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTtgg                                                                                                                                            <  1:312434‑M2/132‑4 (MQ=255)                     ccATCTGTTTATGCGATTGCAGGGCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTtgg                                                                                                                                            >  2:312434‑M2/1‑129 (MQ=255)                       aTCTGTTTATGCGATTGCAGGGCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGaa                                                                                                                         <  1:138731/149‑1 (MQ=255)                                           ggCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCa                                                                                                        >  1:298830/1‑146 (MQ=255)                                           ggCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCa                                                                                                        >  5:126540/1‑146 (MQ=255)                                                  aTGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTgg                                                                                              <  6:122100/149‑1 (MQ=255)                                                  aTGGCCATCCAGTAAGAGAGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTgg                                                                                              <  6:47566/149‑1 (MQ=255)                                                      ccATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGAGCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACTGTAAGTTACGGAAGGTTCGCAGAGACTTTGGCAgg                                                                                          <  2:109828/149‑2 (MQ=255)                                                      ccATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGAt                                                                                                                                        >  7:185674/1‑103 (MQ=255)                                                       cATCCAGTAAGCGCGTTCCTTCTTGCGTCCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGc                                                                                          <  8:185405/148‑1 (MQ=255)                                                       cATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGAGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGc                                                                                          >  7:185405/1‑148 (MQ=255)                                                        aTCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCCATGCTCAGGTCATTGGCGTTGGCCATCGGCGAGTACAGGAAGTTACCGAAGCTCAGCAGAGACTTTGGCAGCgt                                                                                        >  5:55957/1‑149 (MQ=255)                                                        aTCCAGTAAGAGCGTTCCTTCTTGCGACCTGAAAGACAGTCAAGACCGCTACCCAGCCACTCTAATCCGTGAGCGATGCTCAGGTCATTGTCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGTTGAGCAGAGACTTTGGCAGCgt                                                                                        >  5:50616/1‑149 (MQ=255)                                                                          ttcttGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAAc                                                                      >  5:335891/1‑149 (MQ=255)                                                                            cttGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAAc                                                                      >  7:284221/1‑147 (MQ=255)                                                                             ttGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACt                                                                                                  <  8:271674/118‑1 (MQ=255)                                                                             ttGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACt                                                                                                  >  7:271674/1‑118 (MQ=255)                                                                               gCGACCTGAAAGACCCGCCAGAACGCTACCCATCCACTCTAATCCGTGATCGATGCTCAGGTCATTGTCGTTGTCGATCTGCTATTACAGGAAGTTACCGAATGTGCGCAGAGACTTTGGCAGATTGTCGATCGCAACCATAACTAg                                                                   <  6:50616/147‑1 (MQ=255)                                                                                 gACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATc                                                                                 >  6:78788/1‑131 (MQ=255)                                                                                 gACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATc                                                                                 <  5:78788/131‑1 (MQ=255)                                                                                    cTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCg                                                            >  4:191109/1‑149 (MQ=255)                                                                                      gAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGc                                                                  <  7:63986/141‑1 (MQ=255)                                                                                      gAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGc                                                                  >  8:63986/1‑141 (MQ=255)                                                                                      gAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATAGGCGAGTACAGGAAGTTACCGAAGGTGCGCTGAGACTTTGGAAGAGTGTCGATCGCAACCATAACTAGCCCAGCgg                                                           >  3:217626/1‑148 (MQ=255)                                                                                       aaaGACCGTCCAGACCGCTACCCAGCGACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCa                                                         >  8:307021/1‑149 (MQ=255)                                                                                           aCCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCa                                                     >  8:168507/1‑149 (MQ=255)                                                                                                ccAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCAGCAAGCATGTgc                                                >  4:164007/1‑149 (MQ=255)                                                                                                 cAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTgcg                                               <  6:126540/149‑1 (MQ=255)                                                                                                 cAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTgcg                                               <  2:298830/149‑1 (MQ=255)                                                                                                      cGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTtggctgggtagcggtctggacggtctttcaggtcgcaagaaggaacgcgcttactggatggccatggctgccctgcaatcgcataaacagatggttcatga                                          <  3:260012‑M2/149‑102 (MQ=255)                                                                                                       gCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAgc                                         >  8:222461/1‑149 (MQ=255)                                                                                                           cccAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCAGCAAGCATGTGCGCACAgcgcgc                                     <  3:164007/149‑1 (MQ=255)                                                                                                            ccAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTtggctgggtagcggtctggacggtctttcaggtcgcaagaaggaacgcgcttactggatggccatggctgccctgcaatcgcataaacagatggttcatgatcgaga                                    >  4:260012‑M2/1‑42 (MQ=255)                                                                                                              aGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTtggctgggtagcggtctggacggtctttcaggtcgcaagaaggaacgcgcttactggatggccatggctgccctgcaatcgcataaacagatggttcatgatcgagagg                                  <  2:212841‑M2/149‑110 (MQ=255)                                                                                                               gCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAGCGCGCATCa                                 <  8:208464/149‑1 (MQ=255)                                                                                                                  aCGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAGCGCGCATCAGt                               >  5:280760/1‑148 (MQ=255)                                                                                                                      tAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAGCGCGCATCAGTAAggc                          >  4:333071/1‑149 (MQ=255)                                                                                                                        aTCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAGCGCGCATCAGTAAggc                          <  7:222461/147‑1 (MQ=255)                                                                                                                           cGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAGCGCGCATCAGTAAggcggcg                      <  7:168507/148‑1 (MQ=255)                                                                                                                               aGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAGCGCGCATCAGTAAggcggcggc                    >  7:11256/1‑146 (MQ=255)                                                                                                                                gCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCAAGCGGCAAGCATGTGCGCAAAGCGCGCATCAGTAAGGCGGCGGCCa                  >  7:316520/1‑147 (MQ=255)                                                                                                                                       tCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAg                                          <  4:154132/116‑1 (MQ=255)                                                                                                                                       tCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAg                                          >  3:154132/1‑116 (MQ=255)                                                                                                                                         aGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAGCGCGCATCAGTAAGGCGGCGGCCAGAGCGGGTTTc       <  7:307021/149‑1 (MQ=255)                                                                                                                                         aGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAGCGCGCATCAGTAAGGCGGCGGCCAGAGCGGGTTTc       <  8:11256/149‑1 (MQ=255)                                                                                                                                          ggTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAGCGCGCATCAGTAAGGCGGCGGCCAGAGCGGGTTTCg      >  6:30517/1‑149 (MQ=255)                                                                                                                                              aTTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCg                                                            >  7:181492/1‑91 (MQ=255)                                                                                                                                              aTTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCg                                                            <  8:181492/91‑1 (MQ=255)                                                                                                                                              aTTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAGCGCGCATCAGTAAGGCTGCGGCCAGAGCGGGTTTCGTGca  <  6:335891/149‑1 (MQ=255)                                                                                                                                              aTTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAGCGCGCATCAGTAAGGCGGCGGCCAGAGCGGGTTTCGTGc   <  3:191109/148‑1 (MQ=255)                                                                                                                                                  gcgttggcgATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAGCGCGCATCAGt                               <  6:295916/116‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              CCAACCCTCTCGATCATGAACCATCTGTTTATGCGATTGCAGGGCAGCCATGGCCATCCAGTAAGCGCGTTCCTTCTTGCGACCTGAAAGACCGTCCAGACCGCTACCCAGCCACGCTAATCCGTGAGCGATGCTCAGGTCATTGGCGTTGGCGATCGGCGAGTACAGGAAGTTACCGAAGGTGCGCAGAGACTTTGGCAGCGTGTCGATCGCAACCATAACTAGCCCAGCGGCAAGCATGTGCGCACAGCGCGCATCAGTAAGGCGGCGGCCAGAGCGGGTTTCGTGCA  >  NC_002947/4405733‑4406022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.