New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4575531	23 (0.410)	4 (0.080)	4/238	NT	15.6%	intergenic (+49/‑73)	glgX/ybhP‑II	glycogen debranching enzyme/phosphohydrolase
	?	NC_002947	= 4575558	22 (0.420)					intergenic (+76/‑46)	glgX/ybhP‑II	glycogen debranching enzyme/phosphohydrolase

CGACCGGCCGGAGTTGCGCAAGGGGCAGCACCTGCAATTCGATAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4575377‑4575531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaaacccTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGCGTGGCGATCACAACGTAGGACCTGCCTGGGCTATCACCGTTCACTCCTCGTCGTACTGCAACACCATCAGCAGCATCGACCGACCCTTCACCTCGAACGTACTATC  <  NC_002947/4575558‑4575417                                                                                                                                                                                                                                                                                                           CGACCGGCCGGAGTTGCGCAAGGGGCAGCACCTTCAATTCGTTAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCC                                                                                                                                                      <  8:35941/149‑1                                                       GGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGCGTGG                                                                                                        >  3:868/1‑141                                                       GGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGCGTGG                                                                                                        <  4:868/141‑1                                                                                                             GGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGC                                                                                                            <  5:250213/83‑1                                                                                                             GGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGC                                                                                                            >  6:250213/1‑83                                                                                                                                                   GCCAAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGCGTGGCGATCACAACGTAGGACCTGCCTGGGCTATCACCGTTCACTCCTCGTCGTACTGCAACACCATCAGCAGCATCGACCGACCCTTCACCTCGAACGTACTA    >  4:352829/1‑149                                                                                                                                                    CCAAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGCGTGGCGATCACAACGTAGGACCTGCCTGGGCTATCACCGTTCACTCCTCGTCGTACTGCAACACCATCAGCAGCATCGACCGACCCTTCACCTCGAACGTACTAT   >  2:221884/1‑149                                                                                                                                                      AAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGCGTGGCGATCACAACGTAGGACCTGCCTGGGCTATCCCCGTTCACTCCTCGTCGTACTGCAACACCATCAGCAGCATCGACCGACCCTTCACCTCGAACGTACTATC  >  5:210653/1‑148                                                                                                                                                                                                                                                                                                           CGACCGGCCGGAGTTGCGCAAGGGGCAGCACCTGCAATTCGATAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4575377‑4575531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaaacccTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGCGTGGCGATCACAACGTAGGACCTGCCTGGGCTATCACCGTTCACTCCTCGTCGTACTGCAACACCATCAGCAGCATCGACCGACCCTTCACCTCGAACGTACTATC  <  NC_002947/4575558‑4575417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.