New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4575531	23 (0.410)	4 (0.080)	4/238	NT	15.6%	intergenic (+49/‑73)	glgX/ybhP‑II	glycogen debranching enzyme/phosphohydrolase
	?	NC_002947	= 4575558	22 (0.420)					intergenic (+76/‑46)	glgX/ybhP‑II	glycogen debranching enzyme/phosphohydrolase

GATAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCGGGTACTGACGGTGAATACCCACAAGGGCTTCAC  >  NC_002947/4575417‑4575704                                                                                                                                              |                                                                                                                                                   gATAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGGGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAgggttt                                                                                                                                              >  5:210653‑M2/1‑142 (MQ=255)  aTAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAgggtttgg                                                                                                                                            >  2:221884‑M2/1‑141 (MQ=255)   tAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAgggtttggc                                                                                                                                           >  4:352829‑M2/1‑140 (MQ=255)     gTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTggcgg                                                                                                                                         <  1:262491/149‑1 (MQ=255)      tACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATAGCCACGCCAAACCAGGTGGGAACGGTGTACCGGCCACCACAGGGTTTggcgg                                                                                                                                         >  1:279978/1‑148 (MQ=255)      tACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGGTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTggcggc                                                                                                                                        <  8:144756/149‑1 (MQ=255)         gTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGa                                                                                                                                      >  1:130922/1‑148 (MQ=255)                           gtcgATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACt                                                                                                                   >  6:345379/1‑149 (MQ=255)                            gcgATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACtt                                                                                                                  >  4:277186/2‑149 (MQ=255)                              gATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTCGTGATCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACtt                                                                                                                  >  8:316277/1‑147 (MQ=255)                               aTGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCag                                                                                                               <  5:345379/149‑1 (MQ=255)                                                 cAGTACCCCGAGGAGTCAACGGTGATAGCCCAGGCAGTTCCTACGTTGTGATCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTc                                                                                              <  5:323812/148‑1 (MQ=255)                                                               ttGAACGGTTATAGCCCTGGCATGTATTAGGTTGTTATCGCCACGCAAAACCGGGTGGTAAGGGTGTACGGGCCCCCAATGGTTTTGGGGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTaa                                                                                <  2:279978/147‑1 (MQ=255)                                                                       tgttAGCCCCGGCTGGTCCTAGTTTGTGTTGGCCACGCAAAACCCGGTGGGAACGGTGTACCGGCCCCCACTGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGc                                                                       <  4:291009/146‑1 (MQ=255)                                                                       tGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGc                                                                       >  3:291009/1‑149 (MQ=255)                                                                          tAGCCCAGGCAGGTCCTACGTCGTGATCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCa                                                                     <  7:316277/148‑1 (MQ=255)                                                                           aGCTCAGGCAGGTCCTACGTTGTGATTGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACTGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCTGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGc                                                                   <  1:75562/149‑1 (MQ=255)                                                                                       tCCTACGTTGTGATCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGAAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGcc                                                       >  7:232074/1‑149 (MQ=255)                                                                                                   aTCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGaaa                                           >  7:200297/1‑149 (MQ=255)                                                                                                      gccacgccaAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGc                                        >  1:195010/1‑149 (MQ=255)                                                                                                       ccacgccaAACCCGGTGGGAACGGTGTACCGGCCCCCACAgggtttggcgtggcgatcacaacgtaggacctgcctgggctatcaccgttcactcctcgtcgtactgcaacaccatcagcagcatcgaccgacccttcacc                                               <  4:868‑M2/141‑102 (MQ=255)                                                                                                       ccacgccaAACCCGGTGGGAACGGTGTACCGGCCCCCACAgggtttggcgtggcgatcacaacgtaggacctgcctgggctatcaccgttcactcctcgtcgtactgcaacaccatcagcagcatcgaccgacccttcacc                                               >  3:868‑M2/1‑40 (MQ=255)                                                                                                           gccaAACCCGGTGGGAACGGTGTACCGGCCCCCACAgggtttggcgtggcgatcacaacgtaggacctgcctgggctatcacc                                                                                                     >  6:250213‑M2/1‑36 (MQ=255)                                                                                                           gccaAACCCGGTGGGAACGGTGTACCGGCCCCCACAgggtttggcgtggcgatcacaacgtaggacctgcctgggctatcacc                                                                                                     <  5:250213‑M2/83‑48 (MQ=255)                                                                                                                       cggAACGGTGCACCGCCCCCCACCGGGTTGGGCGGCGACAGTGAGTCAGGGTTAACTTCCGGAGGAATCCTTAGACTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGCTCCCGGCCGTGAAACGCCTGCGGGTACTGACGGt                       <  6:182992/148‑1 (MQ=255)                                                                                                                        ggAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGc                                    <  5:73445/135‑1 (MQ=255)                                                                                                                        ggAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGc                                    >  6:73445/1‑135 (MQ=255)                                                                                                                        ggAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCGGGTACTGACGGt                       >  6:91658/1‑148 (MQ=255)                                                                                                                        ggAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCGGGTACTGACGGt                       <  2:195010/148‑1 (MQ=255)                                                                                                                         gAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCGGGTACTGACGGt                       >  5:28279/1‑147 (MQ=255)                                                                                                                         gAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCGGGTACTGACGGt                       <  6:28279/147‑1 (MQ=255)                                                                                                                              gtgtACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCGGGTACTGACGGTGAATAcc                >  6:101754/1‑149 (MQ=255)                                                                                                                                         cccACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCGGGTACTGACGGTGAATACCCACAAGGGCtt     >  5:270928/1‑149 (MQ=255)                                                                                                                                          ccACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCGGGTACTGACGGTGAATACCCACAAGGGCTTc    <  5:101754/149‑1 (MQ=255)                                                                                                                                            acaGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCGGGTACTGACGGTGAATACCCACAAGGGCTTCAc  >  6:265292/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                   GATAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCGGGTACTGACGGTGAATACCCACAAGGGCTTCAC  >  NC_002947/4575417‑4575704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.