New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4613999	32 (0.570)	3 (0.060)	3/244	NT	8.8%	coding (370/4593 nt)	PP_4085	rhs family protein
	?	NC_002947	= 4614032	32 (0.600)					coding (403/4593 nt)	PP_4085	rhs family protein

CACCCTTTCCGTCGGCGAAGACCAGACTGTCGGCGACGCCATCTCCAGCTTTTGCGACAGCCTTGGCAACAGCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4613851‑4613999 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcgcCGCCTCCAGGTGGGCCAGTGATGCCGGCCGCGCGCGCAGCGGGCTCACTGTTAATGAGCACATTGGTTGACCCGCTCTCGATTTTTCCGTAGGGATCGGGCGAGTCCACGCTGTTGCCAAGGCTGTCGCAAAAGCTGGAGAT  <  NC_002947/4614032‑4613891                                                                                                                                                                                                                                                                                                     CACCCTTTCCGTCGGCGAAGACCAGACTGTCGGCGACGCCATCTCCAGCTTTTGCGACAGCCTTGGCAACAGCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCAGCTGCGC                                                                                                                                                >  7:340214/1‑149                                              CAGCTTTTGCGACAGCCTTGGCAACAGCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCCGCCTCCAGGTGGGCCAGTGATGCCGGCCGCGCGCGCAGCG                                                                                                       <  2:20924/145‑1                                                                    AACAGCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCCGCCTCCAGGTGGGCCAGTGATGCCGGCCGCGCGCGCAGCGGG                                                                                                     >  3:286345/1‑125                                                                    AACAGCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCCGCCTCCAGGTGGGCCAGTGATGCCGGCCGCGCGCGCAGCGGG                                                                                                     <  4:286345/125‑1                                                                                                                                               GCTGCGCCGCCTCCAGGTGGGCCAGTGATGCCGGCCGCGCGCGCAGCGGGCTCACTGTTAATGAGCACATTGGTTGACCCGCTCTCGATTTTTCCGTAGGGATCGGGCGAGTCCACGCTGTTGCCAAGGCTGTCGCAAAAGCTGGAGAT  >  5:76176/1‑149                                                                                                                                               GCTGCGCCGCCTCCAGGTGGGCCAGTGATGCCGGCCGCGCGCGCAGCGGGCTCACTGTTAATGAGCACATTGGTTGACCCGCTCTCGATTTTTCCGTAGGGATCGGGCGAGTCCACGCTGTTGCCAAGGCTGTCGCAAAAGCTGGAGAT  <  7:107229/149‑1                                                                                                                                                                                                                                                                                                     CACCCTTTCCGTCGGCGAAGACCAGACTGTCGGCGACGCCATCTCCAGCTTTTGCGACAGCCTTGGCAACAGCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4613851‑4613999 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcgcCGCCTCCAGGTGGGCCAGTGATGCCGGCCGCGCGCGCAGCGGGCTCACTGTTAATGAGCACATTGGTTGACCCGCTCTCGATTTTTCCGTAGGGATCGGGCGAGTCCACGCTGTTGCCAAGGCTGTCGCAAAAGCTGGAGAT  <  NC_002947/4614032‑4613891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.