New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4613999	32 (0.570)	3 (0.060)	3/244	NT	8.8%	coding (370/4593 nt)	PP_4085	rhs family protein
	?	NC_002947	= 4614032	32 (0.600)					coding (403/4593 nt)	PP_4085	rhs family protein

CGACGCCATCTCCAGCTTTTGCGACAGCCTTGGCAACAGCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTCCCGTTCGTGGGGCTGGGGATGGCCATACGTGACATCTTCAACCCGCCCGTGA  >  NC_002947/4613884‑4614167                                                                                                                                                     |                                                                                                                                        cGACGCCATCTCCAGCTTTTGCGACAGCCTTGGCAACAGCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAggcg                                                                                                                                         <  6:36333/149‑1 (MQ=255)        aTCTCCAGCTTTTGCGACAGCCTTGGCAACAGCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGgcgcagc                                                                                                                                  <  7:107229‑M2/149‑8 (MQ=255)        aTCTCCAGCTTTTGCGACAGCCTTGGCAACAGCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGgcgcagc                                                                                                                                  >  5:76176‑M2/1‑142 (MQ=255)             cAGCTTTTGCGACAGCCTTGGCAACAGCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGa                                                                                                                               <  5:61144/147‑1 (MQ=255)                       gACAGCCTTGGCAACAGCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACaa                                                                                                                     >  5:280916/1‑147 (MQ=255)                         cAGCCTTGGCAACAGCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCAGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAgg                                                                                                                 <  8:340214/149‑1 (MQ=255)                             cTTGGCAACAGCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAAcc                                                                                                             >  6:101904/1‑149 (MQ=255)                                  cAACAGCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCa                                                                                                        >  3:122017/1‑149 (MQ=255)                                       gCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTg                                                                                                   <  8:107229/149‑1 (MQ=255)                                         gTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGga                                                                                                 <  4:122017/149‑1 (MQ=255)                                                   ccGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTTATTTTCAGTGAGCCCGCTGTGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGt                                                                                       <  1:300935/149‑1 (MQ=255)                                                         ccTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTccatg                                                                                 >  1:192419/1‑149 (MQ=255)                                                            aCGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCAGCCTGGAGCACGTCGGTTccttggc                                                                               >  8:155766/1‑148 (MQ=255)                                                                aaaaaTCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGt                                                                                           >  8:58013/1‑132 (MQ=255)                                                                aaaaaTCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGt                                                                                           <  7:58013/132‑1 (MQ=255)                                                                     tCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCg                                                                     >  2:73461/1‑149 (MQ=255)                                                                         gagCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGc                                                                 <  2:205860/149‑1 (MQ=255)                                                                               gTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTccat                                                                                  >  6:241000/1‑126 (MQ=255)                                                                               gTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTccat                                                                                  <  5:241000/126‑1 (MQ=255)                                                                                    ccAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCTGCGCAGCCGTTACTGAACATGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTc                                                      <  3:255873/149‑1 (MQ=255)                                                                                    ccAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTc                                                      <  6:280916/149‑1 (MQ=255)                                                                                           gCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTCCCGTTCg                                               >  2:170070/1‑149 (MQ=255)                                                                                            cTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTAt                                                            <  1:267812/135‑1 (MQ=255)                                                                                            cTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTAt                                                            >  2:267812/1‑135 (MQ=255)                                                                                              cATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTCCCGTTCGTgg                                            >  2:50362/1‑149 (MQ=255)                                                                                               aTTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTCCCGTTCGTggg                                           >  6:154047/1‑149 (MQ=255)                                                                                                  aaCAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCAGCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTCCCGTTCGTGGGGCt                                        >  5:41841/1‑149 (MQ=255)                                                                                                           cccGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGgcgcagcgggctcactgttaatgagcacattggttgacccgctctcgatttttccgtagggatcgggcgagtccacgctgtt                                                       <  4:286345‑M2/125‑83 (MQ=255)                                                                                                           cccGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGgcgcagcgggctcactgttaatgagcacattggttgacccgctctcgatttttccgtagggatcgggcgagtccacgctgtt                                                       >  3:286345‑M2/1‑43 (MQ=255)                                                                                                           cccGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTCCCGTTCGTGGGGCTGGGGATGGc                               >  4:102105/1‑149 (MQ=255)                                                                                                             cGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGgcgcagcgggctcactgttaatgagcacattggttgacccgctctcgatttttccgtagggatcgggcgagtccacgctgttgccaaggctgtcgcaaaagctg                                 <  2:20924‑M2/145‑105 (MQ=255)                                                                                                                  cgcgcgcgGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTCCCGTTCGTGGGGCTGGGGATGGCCATAc                          <  2:192419/147‑1 (MQ=255)                                                                                                                      cgcgGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTCCCGTTCGTGGGGCTGGGGATGGCCATACGTGACa                    <  5:154047/149‑1 (MQ=255)                                                                                                                          gccggcATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTCCCGTTCGTGGGGCTGGGGATGGCCATACGTGACATCtt                <  1:50362/149‑1 (MQ=255)                                                                                                                             ggcATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTCCCGTTCGTGGGGCTGGGGATGGCCATACGTGACATCTTCaa             >  2:192317/1‑149 (MQ=255)                                                                                                                                        cccACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTCCCGTTCGTGGGGCTGGGGATGGCCATACGt                        <  2:151643/127‑1 (MQ=255)                                                                                                                                        cccACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTCCCGTTCGTGGGGCTGGGGATGGCCATACGt                        >  1:151643/1‑127 (MQ=255)                                                                                                                                        cccACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTCCCGTTCGTGGGGCTGGGGATGGCCATACGTGACATCTTCAACCCGCCCGTGa  <  6:364529/149‑1 (MQ=255)                                                                                                                                        cccACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTCCCGTTCGTGGGGCTGGGGATGGCCATACGTGACATCTTCAACCCGCCCGTGa  <  1:170070/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                        CGACGCCATCTCCAGCTTTTGCGACAGCCTTGGCAACAGCGTGGACTCGCCCGATCCCTACGGAAAAATCGAGAGCGGGTCAACCAATGTGCTCATTAACAGTGAGCCCGCTGCGCGCGCGGCCGGCATCACTGGCCCACCTGGAGGCGGCGCAGCCGATACTGAACAAGAGGAACCGTCCATCCTGGAGAACGTCGGTTCCATGGCCATGGCTGCGGTGCCTTATCTCGTCCCGTTCGTGGGGCTGGGGATGGCCATACGTGACATCTTCAACCCGCCCGTGA  >  NC_002947/4613884‑4614167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.