New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4683095 =	44 (0.780)	3 (0.060)	3/246	NT	9.1%	coding (1385/1431 nt)	mltD	membrane‑bound lytic murein transglycosylase D
	?	NC_002947	4683139 =	18 (0.330)					coding (1429/1431 nt)	mltD	membrane‑bound lytic murein transglycosylase D

CTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAGGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4683142‑4683095 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgtTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACC  >  NC_002947/4683139‑4683281                                                                                                                                                                                                 CTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGGCCTCAAAGCCGGGGTCGTACCTGTGGGAGCGGG                                            >  7:268412/1‑149    AACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTT                                                                                   >  7:160718/1‑107    AACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTT                                                                                   <  8:160718/107‑1                                           GGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACC  >  5:67293/1‑149                                                                                                                                                                                                 CTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAGGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4683142‑4683095 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgtTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACC  >  NC_002947/4683139‑4683281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.