| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4683095 = | 44 (0.780) | 3 (0.060) | 3/246 | NT | 9.1% | coding (1385/1431 nt) | mltD | membrane‑bound lytic murein transglycosylase D |
| ? | NC_002947 | 4683139 = | 18 (0.330) | coding (1429/1431 nt) | mltD | membrane‑bound lytic murein transglycosylase D | |||||
CTCCACGCAATACAAGGTCCGCAAGGGCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCC > NC_002947/4682991‑4683287 | cTCCACGCAATACAAGGTCCGCAAGGGCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGtt < 7:66096/149‑1 (MQ=255)cTCCACGCAATACAAGGTCCGCAAGGGCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGtt < 6:285685/149‑1 (MQ=255)cTCCACGCAATACAAGGTCCGCAAGGGCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGtt < 3:72183/149‑1 (MQ=255)cTCCACGCAATACAAGGTCCGCAAGGGCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGtt < 4:308769/149‑1 (MQ=255)cTCCACGCAATACAAGGTCCGCAAGGGCGATTCTCTGTACCTGGTGGCCAAACGCTTCAATTTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGtt < 3:189659/149‑1 (MQ=255) cccgctcccacaggtacgaccccggctttgaggcctgtgaaaaacctctgggggcgggcgtgcccgcgaatgggctgcaaagcagcccctgtaacgactcaACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAg > 7:268412‑M1/102‑149 (MQ=255) cACGCAATACAAGGTCCGCAAGGGCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGa < 7:48062/148‑1 (MQ=255) cACGCAATACAAGGTCCGCAAGGGCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAg > 5:91705/1‑149 (MQ=255) cACGCAATACAAGGTCCGCAAGGGCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAg > 3:290870/1‑149 (MQ=255) cGCAATACAAGGTCCGCAAGGGCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTc < 3:340210/149‑1 (MQ=255) aaGGGCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCttt > 3:344563/1‑149 (MQ=255) gggCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGc < 6:282686/149‑1 (MQ=255) tctGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGa > 2:342575/1‑118 (MQ=255) tctGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGa < 1:342575/118‑1 (MQ=255) tACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCG < 4:344563‑M1/148‑1 (MQ=255) aCCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGG > 2:338625‑M1/1‑149 (MQ=255) ccTGGTGGCCTAGCGCGTCAATGTGGAAAAGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAG < 4:211093‑M1/136‑1 (MQ=255) ccTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGCCCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAG > 3:211093‑M1/1‑136 (MQ=255) tggtggCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCAC > 3:127362‑M1/1‑149 (MQ=255) tggtggCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTC < 1:301231‑M1/141‑1 (MQ=255) tggtggCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTC > 2:301231‑M1/1‑141 (MQ=255) aaaaacctctgggggcgggcgtgcccgcgaatgggctgcaaagcagcccctgtaacgactcaACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGtt > 7:160718‑M1/63‑107 (MQ=255) aaaaacctctgggggcgggcgtgcccgcgaatgggctgcaaagcagcccctgtaacgactcaACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGtt < 8:160718‑M1/45‑1 (MQ=255) gtggCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGC < 6:341183‑M1/149‑1 (MQ=255) gtggCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGC < 5:99510‑M1/149‑1 (MQ=255) gtggCCAAGCGCTTCAATGTCGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGC < 4:63005‑M1/149‑1 (MQ=255) gCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCC < 4:290870‑M1/148‑1 (MQ=255) cAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCAACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCAcgcccgcc > 4:265507/1‑149 (MQ=255) aaTGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGCCCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTGTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTGTTTCACAg > 6:72882/1‑149 (MQ=255) aaGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTcaca < 8:248572/144‑1 (MQ=255) aaGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTcaca > 7:248572/1‑144 (MQ=255) cTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCtcccacaggtacgacaccggctttgagga > 1:35967‑M1/1‑120 (MQ=255) cTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGc > 3:297559/1‑149 (MQ=255) aaGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCg < 1:329521/148‑1 (MQ=255) gcTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTc < 6:307319/149‑1 (MQ=255) gAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGt < 4:127362/147‑1 (MQ=255) aCGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTgg < 1:338625/149‑1 (MQ=255) cGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTggg < 4:297559/149‑1 (MQ=255) cGGCCACGCCCTCAAGCCAGGCCAGACCCTGCCCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCtcccacaggtacgacaccggctttgaggactgtgaaaaacctctgggggcgg < 6:91705‑M1/149‑53 (MQ=255) cGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGcccc < 8:138565/100‑1 (MQ=255) cGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGcccc > 7:138565/1‑100 (MQ=255) cGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGCAgcgg > 7:325441‑M2/1‑145 (MQ=255) ctcaacgcccgaggtagacggtcagggtctggcctggcttgagggcgtTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGGCCTCAAAGCCGGGGTCGTACCTGTGGGAGCggg > 7:268412‑M2/49‑149 (MQ=255) aacgcccgaggtagacggtcagggtctggcctggcttgagggcgtTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGttttt < 8:160718‑M2/62‑1 (MQ=255) aacgcccgaggtagacggtcagggtctggcctggcttgagggcgtTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGttttt > 7:160718‑M2/46‑107 (MQ=255) gCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCtcccacaggtacgacaccggctttgaggactgtgaaaaacctctgggggcgggcgtgcc < 2:35967‑M1/149‑60 (MQ=255) ccTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccg < 3:110268‑M2/149‑14 (MQ=255) aaGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCC < 8:96384‑M1/82‑1 (MQ=255) aaGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCC > 7:96384‑M1/1‑82 (MQ=255) gccaggccagACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccgcgaatg < 7:101629‑M2/149‑20 (MQ=255) ccagACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTg < 8:101629/149‑1 (MQ=255) cagACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTg > 1:312774/1‑148 (MQ=255) ccTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAAcc > 4:321917/1‑149 (MQ=255) aCCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGGTTTTGACAGTCCTCAAAGCCGGGGTCGTACCTGTGGGAGCGGGCCTGCCCGCGAATGGGCCGGAAAACCCAGCCACTgg > 4:41233/1‑148 (MQ=39) gggcgtTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAAcc > 5:67293‑M2/7‑149 (MQ=255) gggCGATGACTCGTTACAGGGGCTGCTTTCCAGCCCAATCGCGGGCACGCCCGCCCCCACAGCTATTACACACACCTCAACGCCGGAGACGTACCAGTCCACCCGCCCGTCCCCCCCAATGGGCCTCAAAACACAGCCACTGGAAAAcc > 6:185437/1‑149 (MQ=255) gCGTTGAGTCGTTAGAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCtcccacaggtacgacaccggctttgaggactgtgaaaaacctctgggggcgggcgtgc < 3:17951‑M1/110‑59 (MQ=255) tGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGcc > 2:1427/1‑149 (MQ=255) | CTCCACGCAATACAAGGTCCGCAAGGGCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCC > NC_002947/4682991‑4683287 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |