| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4914034 = | 52 (0.920) | 3 (0.050) | 3/252 | NT | 5.3% | coding (665/1989 nt) | ccmF | holocytochrome c synthetase |
| ? | NC_002947 | 4914078 = | 56 (1.010) | coding (621/1989 nt) | ccmF | holocytochrome c synthetase | |||||
TTTGGCCTGATCGTTCACCCACCCATGCTCTACATGGGCTATGTGGGCTTCTCGGTGGCTTTCGCGTTCGCCATTGCCGCCTTGCTCGGCGGCCGGCTGGACGCTGCCTGGGCGCGCTGGTCGCGGCCGTGGACCATCGTCGCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4914182‑4914034‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGATCAGGCCAAAGTCCTGCAACAGCGGGTTGAGGTCACGGCCATCGGTCGGCAC > NC_002947/4914078‑4914224 TTTGGCCTGATCGTTCACCCACCCATGCTCTACATGGGCTATGTGGGCTTCTCGGTGGCTTTCGCGTTCGCCATTGCCGCCTTGCTCGGCGGCCGGCTGGACGCTGCCTGGGCGCGCTGGTCGCGGCCGTGGACCATCGTCGCCTGGGC > 2:212828/1‑149TTTGGCCTGATCGTTCACCCACCCATGCTCTACATGGGCTATGTGGGCTTCTCGGTGGCTTTCGCGTTCGCCATTGCCGCCTTGCTCGGCGGCCGGCTGGACGCTGCCTGGGCGCGCTGGTCGCGGCCGTGGACCATCGTCGCCTGGGC > 7:120224/1‑149TTTGGCCTGATCGTTCACCCACCCATGCTCTACATGGGCTATGTGGGCTTCTCGGTGGCTTTCGCGTTCGCCATTGCCGCCTTGCTCGGCGGCCGGCTGGACGCTGCCTGGGCGCGCTGGTCGCGGCCGTGGACCATCGTCGCCTGGGC > 7:289126/1‑149 GCTGCCTGGGCGCGCTGGTCGCGGCCGTGGACCATCGTCGCCTGGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGA > 7:324869/1‑124 GCTGCCTGGGCGCGCTGGTCGCGGCCGTGGACCATCGTCGCCTGGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGA < 8:324869/124‑1 TGCCTGGGCGCGCTGGTCGCGGCCGTGGACCATCGTCGCCTGGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGATCAGGCCA > 5:264396/1‑148 GCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGATCAGGCCAAAGTCCTGCAACAGCGGGTTGAGGTCACGGCCATCGGTCGGCAC < 3:140433/149‑1 TTTGGCCTGATCGTTCACCCACCCATGCTCTACATGGGCTATGTGGGCTTCTCGGTGGCTTTCGCGTTCGCCATTGCCGCCTTGCTCGGCGGCCGGCTGGACGCTGCCTGGGCGCGCTGGTCGCGGCCGTGGACCATCGTCGCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4914182‑4914034‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGATCAGGCCAAAGTCCTGCAACAGCGGGTTGAGGTCACGGCCATCGGTCGGCAC > NC_002947/4914078‑4914224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |