| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4914034 = | 52 (0.920) | 3 (0.050) | 3/252 | NT | 5.3% | coding (665/1989 nt) | ccmF | holocytochrome c synthetase |
| ? | NC_002947 | 4914078 = | 56 (1.010) | coding (621/1989 nt) | ccmF | holocytochrome c synthetase | |||||
GGTCACCGCCAGCGAGTGGATCAGTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGATCAGGCCAAA > NC_002947/4913886‑4914182 | ggTCACCGCCAGCGAGTGGATCAGTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAg < 8:38553/149‑1 (MQ=255) gtgccgaccgatggccgtgacctcaacccgctgttgcaggactttggcctgatcgttcacccacccatgctctacatgggctatgtgggcttctcggtggctttcgcgttcgccattgccgccttgctcggcggccggctggacgctGc < 3:140433‑M1/2‑1 (MQ=255) tCACCGCCAGCGAGTGGATCAGTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGT‑CCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGcc > 7:257864/1‑148 (MQ=255) aCCGCCAGCGAGTGGATCAGTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGT‑CCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAg < 8:257864/149‑1 (MQ=255) aGTGGATCAGTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCGCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATg < 5:30070/149‑1 (MQ=255) aGTGGATCAGTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATg < 2:79799/149‑1 (MQ=255) gTGGATCAGTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATgg < 1:344435/149‑1 (MQ=255) tGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCGAACACCCAGGAACGCCCAGGCGACGAGGGTCCACGGcc > 8:161746/1‑149 (MQ=255) tGCGGTGCCCACCAGCCAAGGCATGAACCAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAg > 2:247594/1‑130 (MQ=255) tGCGGTGCCCACCAGCCAAGGCATGAACCAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAg < 1:247594/130‑1 (MQ=255) gCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGcc > 8:289126/1‑149 (MQ=255) ccAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGcc > 3:50840/1‑148 (MQ=255) tggcctgatcgttcacccacccatgctctacatgggctatgtgggcttctcggtggctttcgcgttcgccattgccgccttgctcggcggccggctggacgctGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCa > 5:264396‑M1/104‑148 (MQ=255) aTGAACGAGGCGTTTTCCACCGGGTCCCAGAACAACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCAAACAACCAGGAAAGCCCATGCGACGATGGTCCAAGGcc > 7:308201/1‑127 (MQ=255) aCGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTc > 3:244055/1‑148 (MQ=255) gAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAg > 4:155479/1‑149 (MQ=255) cACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGa < 1:232693/149‑1 (MQ=255) aCCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAAGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGACGCCGAg > 7:244087/1‑149 (MQ=255) gggTCCCAGAACCACCATCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGTAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCaa < 3:301134/149‑1 (MQ=255) gggTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGc > 5:314774/1‑147 (MQ=255) ggTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGCCGATGGTCCCCGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCTGCCGAGCAAg > 7:174577/1‑149 (MQ=255) tctacatgggctatgtgggcttctcggtggctttcgcgttcgccattgccgccttgctcggcggccggctggacgctGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGc < 8:324869‑M1/47‑1 (MQ=255) tctacatgggctatgtgggcttctcggtggctttcgcgttcgccattgccgccttgctcggcggccggctggacgctGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGc > 7:324869‑M1/78‑124 (MQ=255) aGAAGCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAggcggc > 4:228095/1‑148 (MQ=255) aGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAggcggc > 3:325137/1‑148 (MQ=255) accaccAGCCACCCCACGCCCGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATg < 8:152456/149‑1 (MQ=255) acaaccaGCCACCCCACCCCAGTCCCTAGTACGCCCACCACGACCCCAAGGTGATGCCAACACCCAGTAACTCCCACGAGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATg < 8:147769/146‑1 (MQ=255) gcccagTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCCCGGCCGCGCCCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCa > 8:279205/1‑149 (MQ=255) cagTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCAcc > 5:209356/1‑148 (MQ=255) gtagtaGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCga < 4:203467/144‑1 (MQ=255) gtagtaGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCga > 3:203467/1‑144 (MQ=255) tagtagGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGcc > 4:140433/1‑149 (MQ=255) tagGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCcac < 7:113925/149‑1 (MQ=255) gCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCTTAAATTTCGAACTCGAAATCCACCGAGAAGCCCACATa < 4:244055/149‑1 (MQ=255) cccACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAg < 4:325137/149‑1 (MQ=255) cccACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAg > 2:344970/1‑149 (MQ=255) ccaccaCGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGc > 7:249722/1‑149 (MQ=255) ccaccaCGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGc < 7:161746/149‑1 (MQ=255) ccacGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCa < 3:155479/149‑1 (MQ=255) acGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATg < 7:61812/149‑1 (MQ=255) gACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATg > 8:14058/1‑147 (MQ=255) cAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCa > 1:212828/1‑149 (MQ=255) cAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCa > 5:35732/1‑149 (MQ=255) cAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCa > 1:191843/1‑149 (MQ=255) cAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCa > 5:165687/1‑149 (MQ=255) ggTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCa < 2:213351/63‑1 (MQ=255) ggTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCa > 1:213351/1‑63 (MQ=255) tGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCAtgggt > 7:313841/1‑149 (MQ=255) aTGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCAtgggtgg < 7:279205/149‑1 (MQ=255) aTGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCAtgggtgg < 8:249722/149‑1 (MQ=255) tGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCAtgggtgg < 3:228095/148‑1 (MQ=255) aaCACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACTAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGTCCATGTAGAGCAtgggtgg > 4:194756/1‑144 (MQ=255) aaCACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACTAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGTCCATGTAGAGCAtgggtgg < 3:194756/144‑1 (MQ=255) aaCACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGaa > 8:120224/1‑149 (MQ=255) acacCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAAc < 2:191843/149‑1 (MQ=255) ccAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGAt > 4:179258/1‑148 (MQ=255) ccAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGATc > 4:99304/1‑149 (MQ=255) cAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGAt > 4:313511/1‑147 (MQ=255) GCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGATCAGGCCaaa > 7:289126‑M1/1‑149 (MQ=255) GCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGATCAGGCCaaa > 2:212828‑M1/1‑149 (MQ=255) GCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGATCAGGCCaaa > 7:120224‑M1/1‑149 (MQ=255) | GGTCACCGCCAGCGAGTGGATCAGTGCGGTGCCCACCAGCCAAGGCATGAACGAGGCGTTTTCCACCGGGTCCCAGAACCACCAGCCACCCCAGCCCAGTTCGTAGTAGGCCCACCACGACCCCAAGGTGATGCCAACACCCAGGAAAGCCCAGGCGACGATGGTCCACGGCCGCGACCAGCGCGCCCAGGCAGCGTCCAGCCGGCCGCCGAGCAAGGCGGCAATGGCGAACGCGAAAGCCACCGAGAAGCCCACATAGCCCATGTAGAGCATGGGTGGGTGAACGATCAGGCCAAA > NC_002947/4913886‑4914182 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |