New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5081136 =	50 (0.880)	3 (0.060)	3/246	NT	5.5%	coding (403/1236 nt)	lysC	aspartokinase
	?	NC_002947	5081200 =	55 (1.020)					coding (339/1236 nt)	lysC	aspartokinase

GATCAAGCGTGGTGTGCCAGCGGTGTCCTACACCGGCAACCAGGTGCGTATTCTCACCGACAGCTCGCACAACAAGGCGCGCATTCTGCAAATCGACGACCAGAAGATTCGTGCCGACCTCAAGGAAGGCCGCGTGGTCGTGGTTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5081284‑5081136 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcagAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACACCGCTGGCACACCACGCTTGATCAAGGCCATGGTCAGCAGGGCAATGGTGACCTGCTCACCCGTCGACACGATCACGTCCAGTT  >  NC_002947/5081200‑5081345                                                                                                                                                                                                                                                                                                         GATCAAGCGTGGTGTGCCAGCGGTGTCCTACACCGGCAACCAGGTGCGTATTCTCACCGACAGCTCGCACAACAAGGCGCGCATTCTGCAAATCGACGACCAGAAGATTCGTGCCGACCTCAAGGAAGGCCGCGTGGTCGTGGTTGCA                                                                                                                                                     <  1:12076/148‑1                   AGCGGTGTCCTACACCGGCAACCAGGTGCGTATTCTCACCGACAGCTCGCACAACAAGGCGCGCATTCTGCAAATCGACGACCAGAAGATTCGTGCCGACCTCAAGGAAGGCCGCGTGGTCGTGGTT                                                                                                                                                        >  3:221971/1‑127                   AGCGGTGTCCTACACCGGCAACCAGGTGCGTATTCTCACCGACAGCTCGCACAACAAGGCGCGCATTCTGCAAATCGACGACCAGAAGATTCGTGCCGACCTCAAGGAAGGCCGCGTGGTCGTGGTT                                                                                                                                                        <  4:221971/127‑1                                                                                CGCATTCTGCAAATCGACGACCAGAAGATTCGTGCCGACCTCAAGGAAGGCCGCGTGGTCGTGGTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACACCGCTGGCACACCACGC                                                                     >  5:19918/1‑149                                                                                 GCATTCTGCAAATCGACGACCAGAAGATTCGTGCCGACCTCAAGGAAGGCCGCGTGGTCGTGGTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACACCGCTGGCACACCACGCT                                                                    >  6:275319/1‑149                                                                                                      AGAAGATTCGTGCCGACCTCAAGGAAGGCCGCGTGGTCGTGGTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACACCGCTGGCACACCACGCTTGATCAAGGCCATGGTCAGCA                                               <  5:275319/149‑1                                                                                                                                                    AGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACACCGCTGGCACACCACGCTTGATCAAGGCCATGGTCAGCAGGGCAATGGTGACCTGCTCACCCGTCGACACGATCACGTCCAGTT  >  5:329304/1‑148                                                                                                                                                                                                                                                                                                         GATCAAGCGTGGTGTGCCAGCGGTGTCCTACACCGGCAACCAGGTGCGTATTCTCACCGACAGCTCGCACAACAAGGCGCGCATTCTGCAAATCGACGACCAGAAGATTCGTGCCGACCTCAAGGAAGGCCGCGTGGTCGTGGTTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5081284‑5081136 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcagAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACACCGCTGGCACACCACGCTTGATCAAGGCCATGGTCAGCAGGGCAATGGTGACCTGCTCACCCGTCGACACGATCACGTCCAGTT  >  NC_002947/5081200‑5081345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.