New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5081136 =	50 (0.880)	3 (0.060)	3/246	NT	5.5%	coding (403/1236 nt)	lysC	aspartokinase
	?	NC_002947	5081200 =	55 (1.020)					coding (339/1236 nt)	lysC	aspartokinase

CGGGTCGGTGGTGTAGACGCCATCAACATCAGTGTAGATCTGGCACTCATCAGCCTTCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACACCGCTGGCACACCACGCTT  >  NC_002947/5080990‑5081280                                                                                                                                                   |                                                                                                                                                  aactggacgtgatcgtgtcgacgggtgagcaggtcaccattgccctgctgaccatggccttgatcaagcgtggtgtgccagcggtgtcctacaccggcaaccaggtgcgtattctcaccgacagctcgcacaacaaggcgcgcattCt                                                                                                                                                  >  5:329304‑M1/147‑148 (MQ=255)  gggTCGGTGGTGTAGACGCCATCAACATCAGTGTAGATCTGGCACTCATCAGCCTTCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGc                                                                                                                                                <  6:111954/149‑1 (MQ=255)       ggtggtGTAGACGCCATCAACATCAGTGTAGATCTGGCACTCATCAGCCTTCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCaa                                                                                                                                              <  3:230337/146‑1 (MQ=255)       ggtggtGTAGACGCCATAAACATCAGTGTAGATCTCGGACTAATCAGACTTCATATAAACAGCCAGGGCCACGCCGGTGGTTTCAGAGGCACCCCGCCCCAGGGTAGTGATGCTGCCGTGATCGTCGACGAACTGGAAGCCTGCAacag                                                                                                                                           >  4:230337/1‑147 (MQ=255)                          aCATCAGTGTAGATCTGGCACTCATCAGCCTTCAGCGCCGCCTCCAGGGCCACGGCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑ccttcctt                                                                                                                       <  6:293828/149‑1 (MQ=255)                            aTCAGTGTAGATCTGGCACTCATCAGCCTTCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGa                                                                                                                     <  4:255293/149‑1 (MQ=255)                                     gATCTGGCACTCATCAGCCTTCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCAc                                                                                                            >  6:316717/1‑149 (MQ=255)                                     gATCTGGCACTCATCAGCCTTCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGAGG‑CCTTCCTTGAGGTCGGCAc                                                                                                            >  3:174870/1‑149 (MQ=255)                                         tGGCACTCATCAGCCTTCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTCGAGGTCgg                                                                                                               >  6:293766/1‑142 (MQ=255)                                         tGGCACTCATCAGCCTTCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTCGAGGTCgg                                                                                                               <  5:293766/142‑1 (MQ=255)                                             aCTCATCAGCCTTCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAAtcttc                                                                                                    <  7:106438/149‑1 (MQ=255)                                             aCTCATCAGCCTTCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAAtcttc                                                                                                    >  5:257781/1‑149 (MQ=255)                                              tgctgaccatggccttgatcaagcgtggtgtgccagcggtgtcctacaccggcaaccaggtgcgtattctcaccgacagctcgcacaacaaggcgcgcattCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAAtcttct                                                                                                   <  5:275319‑M1/48‑1 (MQ=255)                                              cTCATGAGCCTTGAGCGGCGCCGCCAGGGCGACGCCGGTGGTATCTGAGCCACGACGACCGAGGGTTGTGATGCTGCCGTGCTCGTCGACGCGCGGGTAGCCTGCAACCACGACGTCGCGG‑CCTTCGTTGAGGTCGGCTCGAAtcttct                                                                                                   <  4:252047/149‑1 (MQ=255)                                                  tcaGCCTTCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGgtc                                                                                               <  6:257781/149‑1 (MQ=255)                                                      ccTTCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAg                                                                                                                    <  5:171361/124‑1 (MQ=255)                                                      ccTTCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAg                                                                                                                    >  6:171361/1‑124 (MQ=255)                                                       cTTCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑cct                                                                                                                            >  3:273714/1‑115 (MQ=255)                                                       cTTCAGCGCCGCCGCCAGGGCCACACCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑cct                                                                                                                            <  4:273714/115‑1 (MQ=255)                                                        ttCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGAt                                                                                         >  2:340590/1‑149 (MQ=255)                                                        ttCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGAt                                                                                         >  1:108826/1‑149 (MQ=255)                                                                 ggggccAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAAt                                                                                <  5:222642/146‑1 (MQ=255)                                                                   agcgtggtgtgccagcggtgtcctacaccggcaaccaggtgcgtattctcaccgacagctcgcacaacaaggcgcgcattCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATgc                                                                              >  6:275319‑M1/81‑149 (MQ=255)                                                                    gcgtggtgtgccagcggtgtcctacaccggcaaccaggtgcgtattctcaccgacagctcgcacaacaaggcgcgcattCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATgcg                                                                             >  5:19918‑M1/80‑149 (MQ=255)                                                                      cAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGGAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTg                                                                                                  >  2:42340/1‑126 (MQ=255)                                                                      cAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGGAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTg                                                                                                  <  1:42340/126‑1 (MQ=255)                                                                       aGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATgcgcgc                                                                          >  8:221944/1‑149 (MQ=255)                                                                          gCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAAtcttc                                                                                                    <  4:324800/120‑1 (MQ=255)                                                                          gCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAAtcttc                                                                                                    >  3:324800/1‑120 (MQ=255)                                                                           ccACGCCGGTGGTATCAGAGCCACCAAGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCGTCTGGTCGTCGAATTGCAGCATccgctcgtgg                                                                      >  6:251618/1‑143 (MQ=255)                                                                             aCGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCttgtt                                                                    <  2:108826/149‑1 (MQ=255)                                                                                               ccaccaCGACCCTGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGt                                                     >  1:256137/1‑146 (MQ=255)                                                                                                 accacGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAAt                                                                                >  5:236666/1‑117 (MQ=255)                                                                                                 accacGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAAt                                                                                <  6:236666/117‑1 (MQ=255)                                                                                                  ccacGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGTTCGGCACGAATCTTCTGGTCGTCGATTTGGAGTATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAAt                                               <  5:251618/149‑1 (MQ=255)                                                                                                   cacGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGt                                                     <  2:180085/142‑1 (MQ=255)                                                                                                   cacGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGt                                                     >  1:180085/1‑142 (MQ=255)                                                                                                    acGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATAc                                             >  7:26703/1‑149 (MQ=255)                                                                                                     cGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACg                                            <  1:340590/149‑1 (MQ=255)                                                                                                         ccAGGGTAGTGAAGCTGCCGTGCTCGTCGACGCCCTAGAAGCCTGAAAACACGAACACTCTT‑ACTTACTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCATGTTGTGCGAGCTTTCTGTGAGAATACGCAcc                                        <  5:342898/149‑1 (MQ=255)                                                                                                           aGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTg                                      >  5:295209/1‑149 (MQ=255)                                                                                                            gggTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTgg                                     <  7:221944/149‑1 (MQ=255)                                                                                                                          ccGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGa                       >  2:155120/1‑149 (MQ=255)                                                                                                                               cTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGGCCCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACAcc                   >  1:68802/1‑149 (MQ=255)                                                                                                                               cTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACACCg                  >  5:355842/1‑149 (MQ=255)                                                                                                                                  gtcgACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAg                                                             >  3:348416/1‑103 (MQ=255)                                                                                                                                  gtcgACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAg                                                             <  4:348416/103‑1 (MQ=255)                                                                                                                                  gtcgACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGt                                                         >  6:156122/1‑107 (MQ=255)                                                                                                                                  gtcgACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGt                                                         <  5:156122/107‑1 (MQ=255)                                                                                                                                  gtcgACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGcc                                >  4:41020/1‑132 (MQ=255)                                                                                                                                  gtcgACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGcc                                <  3:41020/132‑1 (MQ=255)                                                                                                                                  gtcgACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACACCg                  >  6:61687/1‑146 (MQ=255)                                                                                                                                  gtcgACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACACCg                  <  5:61687/146‑1 (MQ=255)                                                                                                                                  gtcgACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACACCGCt                <  1:155120/148‑1 (MQ=255)                                                                                                                                          catGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACACCGCTGGCAcacca       >  7:256877/3‑149 (MQ=255)                                                                                                                                              gAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACACCGCTGGCACACCACGCt   >  3:265501/1‑149 (MQ=255)                                                                                                                                               aaGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATGTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACACCGCTGGCACACCACGCtt  <  7:146277/149‑1 (MQ=255)                                                                                                                                               aaGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACACCGCTGGCACACCACGCtt  >  1:23580/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                  CGGGTCGGTGGTGTAGACGCCATCAACATCAGTGTAGATCTGGCACTCATCAGCCTTCAGCGCCGCCGCCAGGGCCACGCCGGTGGTATCAGAGCCACCACGACCCAGGGTAGTGATGCTGCCGTGCTCGTCGACGCCCTGGAAGCCTGCAACCACGACCACGCGG‑CCTTCCTTGAGGTCGGCACGAATCTTCTGGTCGTCGATTTGCAGAATGCGCGCCTTGTTGTGCGAGCTGTCGGTGAGAATACGCACCTGGTTGCCGGTGTAGGACACCGCTGGCACACCACGCTT  >  NC_002947/5080990‑5081280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.