New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5122388	60 (1.060)	3 (0.060)	3/248	NT	5.4%	coding (362/981 nt)	PP_4508	AraC family transcriptional regulator
	?	NC_002947	= 5122425	48 (0.880)					coding (325/981 nt)	PP_4508	AraC family transcriptional regulator

CTCGAACACCAGCGCATCATGTGGGGCGCCGAACACCAGCGGCGAATGGAACGCCACCTTGTAAGGCTCGACATTCTTCGGCTGCGGCCCCTGCACCAGGACCCGCCGCGGCTGGACCGGCCGGCCACTGAGCCATTTGCAAAGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5122240‑5122388 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaACCCGGCACAGCGCCGAAGCGTCGCTGGCCTGTGCGCTGGCGCTTTGCAAATGGCTCAGTGGCCGGCCGGTCCAGCCGCGGCGGGTCCTGGTGCAGGGGCCGCAGCCGAAGAATGTCGAGCCTTACAAGGTGGCGTTCCATTCGCCGC  <  NC_002947/5122425‑5122278                                                                                                                                                                                                                                                                                                           CTCGAACACCAGCGCATCATGTGGGGCGCCGAACACCAGCGGCGAATGGAACGCCACCTTGTAAGGCTCGACATTCTTCGGCTGCGGCCCCTGCACCAGGACCCGCCGCGGCTGGACCGGCCGGCCACTGAGCCATTTGCAAAGCGC                                                                                                                                                        >  6:162373/1‑147            GCGCATCATGTGGGGCGCCGAACACCAGCGGCGAATGGAACGCCACCTTGTAAGGCTCGACATTCTTCGGCTGCGGCCCCTGCACCAGGACCCGCCGCGGCTGGACCGGCCGGCCACTGAGCCATTTGCAAAGCGC                                                                                                                                                        >  5:8508/1‑136            GCGCATCATGTGGGGCGCCGAACACCAGCGGCGAATGGAACGCCACCTTGTAAGGCTCGACATTCTTCGGCTGCGGCCCCTGCACCAGGACCCGCCGCGGCTGGACCGGCCGGCCACTGAGCCATTTGCAAAGCGC                                                                                                                                                        <  6:8508/136‑1                                             AATGGAACGCCACCTTGTAAGGCTCGACATTCTTCGGCTGCGGCCCCTGCACCAGGACCCGCCGCGGCTGGACCGGCCGGCCACTGAGCCATTTGCAAAGCGCCAACCCGGCACAGCGCCGAAGCGTCGCTGGCCTGTGCGCTGGCGCT                                                                                                          <  8:27361/149‑1                                                  AACGCCACCTTGTAAGGCTCGACATTCTTCGGCTGCGGCCCCTGCACCAGGACCCGCCGCGGCTGGACCGGCCGGCCACTGAGCCATTTGCAAAGCGCCAACCCGGCACAGCGCCGAAGCGTCGCTGGCCTGTGCGCTGGCGCTTT                                                                                                        >  5:299714/1‑146                                                  AACGCCACCTTGTAAGGCTCGACATTCTTCGGCTGCGGCCCCTGCACCAGGACCCGCCGCGGCTGGACCGGCCGGCCACTGAGCCATTTGCAAAGCGCCAACCCGGCACAGCGCCGAAGCGTCGCTGGCCTGTGCGCTGGCGCTTT                                                                                                        <  6:299714/146‑1                                                                                                                                                     AACCCGGCACAGCGCCGAAGCGTCGCTGGCCTGTGCGCTGGCGCTTTGCAAATGGCTCAGTGGCCGGCCGGTCCAGCCGCGGCGGGTCCTGGTGCAGGGGCCGCAGCCGAAGAATGTCGAGCCTTACAAGGTGGCGTTCCATTCGCCGC  >  6:205016/1‑149                                                                                                                                                     AACCCGGCACAGCGCCGAAGCGTCGCTGGCCTGTGCGCTGGCGCTTTGCAAATGGCTCAGTGGCCGGCCGGTCCAGCCGCGGCGGGTCCTGGTGCAGGGGCCGCA                                              <  7:271600/105‑1                                                                                                                                                     AACCCGGCACAGCGCCGAAGCGTCGCTGGCCTGTGCGCTGGCGCTTTGCAAATGGCTCAGTGGCCGGCCGGTCCAGCCGCGGCGGGTCCTGGTGCAGGGGCCGCA                                              >  8:271600/1‑105                                                                                                                                                                                                                                                                                                           CTCGAACACCAGCGCATCATGTGGGGCGCCGAACACCAGCGGCGAATGGAACGCCACCTTGTAAGGCTCGACATTCTTCGGCTGCGGCCCCTGCACCAGGACCCGCCGCGGCTGGACCGGCCGGCCACTGAGCCATTTGCAAAGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5122240‑5122388 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaACCCGGCACAGCGCCGAAGCGTCGCTGGCCTGTGCGCTGGCGCTTTGCAAATGGCTCAGTGGCCGGCCGGTCCAGCCGCGGCGGGTCCTGGTGCAGGGGCCGCAGCCGAAGAATGTCGAGCCTTACAAGGTGGCGTTCCATTCGCCGC  <  NC_002947/5122425‑5122278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.