New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 519939558 (1.030)4 (0.070) 4/248 NT 6.6% coding (682/912 nt) PP_4579 LysR family transcriptional regulator
?NC_002947 = 5199429 57 (1.050)coding (716/912 nt) PP_4579 LysR family transcriptional regulator

ACTATGCGTCGCTGGCCGAACTTGGGCGCGAGCGCATCATCACCTTCTCGAAGAATTCACGGCCGCACCAGGAGGTGCTGAGCTTGCTGCAGGCTGCGGGGGCAGAGGCACCACGGTTGAATTGTGTGAACTCGGTGGCGGCGATTACCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5199243‑5199395
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcGGTAGCGCGCCAATGCCAAAGCCGTCGCGCAACAGCCGGGTAATCGCCGCCACCGAGTTCACACAATTCAACCGTGGTGCCTCTGCCCCCGCAGCCTGCAGCAAGCTCAGCACCTCCTGGTGCGGCCGTGAATTCTTCGAGAAGGTG  <  NC_002947/5199429‑5199283
                                                                                                                                                                                                                                                                                                            
ACTATGCGTCGCTGGCCGAACTTGGGCGCGAGCGCATCATCACCTTCTCGAAGAATTCACGGCCGCACCAGGAGGTGCTGAGCTTGCTGCAGGCTGCGGGGGCAGAGGCACCACGGTTGAATTGTGTGAACTCGGTGGCGGCGATTACC                                                                                                                                                         <  7:289936/149‑1
    TGCGTCGCTGGCCGAACTTGGGCTCGTGCGCATCATCACCTTCTCCATGAATTCACGGCCGCACCAGGAGGTGCTGAGCTTGGTGCAGGCTGCGGGGGCAGAGGCACCACGGTTGAATTGTGTGAACTCGGTGGCGGCGATTACCCGG                                                                                                                                                      <  6:207747/148‑1
    TGCGTCGCTGGCCGAACTTGGGCGCGAGCGCATCATCACCTTCTCGAAGAATTCACGGCCGCACCAGGAGGTGCTGAGCTTGCTGCAGGCTGCGGGGGCAGAGGCACCACGGTTGAATTGTGTGAACTCGGTGGCGGCGATTACCCGGC                                                                                                                                                     <  1:313689/149‑1
    TGCGTCGCTGGCCGAACTTGGGCGCGAGCGCATCATCACCTTCTCGAAGAATTCACGGCCGCACCAGGAGGTGCTGAGCTTGCTGCAGGCTGCGGGGGCAGAGGCACCACGGTTGAATTGTGTGAACTCGGTGGCGGCGATTACCCG                                                                                                                                                       >  5:70898/1‑147
    TGCGTCGCTGGCCGAACTTGGGCGCGAGCGCATCATCACCTTCTCGAAGAATTCACGGCCGCACCAGGAGGTGCTGAGCTTGCTGCAGGCTGCGGGGGCAGAGGCACCACGGTTGAATTGTGTGAACTCGGTGGCGGCGATTACCCG                                                                                                                                                       <  6:70898/147‑1
                                       TCACCTTCTCGAAGAATTCACGGCCGCACCAGGAGGTGCTGAGCTTGCTGCAGGCTGCGGGGGCAGAGGCACCACGGTTGAATTGTGTGAACTCGGTGGCGGCGATTACCCGGCGGTAGCGCGCCAATGCCAAAGCCGTCGCGCAACAG                                                                                                                  >  5:178655/1‑149
                                           CTTCTCGAAGAATTCACGGCCGCACCAGGAGGTGCTGAGCTTGCTGCAGGCTGCGGGGGCAGAGGCACCACGGTTGAATTGTGTGAACTCGGTGGCGGCGATTACCCGGCGGTAGCGCGCCAATGCCAAAGCCGTCGCGCAACAGCCGG                                                                                                              <  6:178655/149‑1
                                                               CGCACCAGGAGGTGCTGAGCTTGCTGCAGGCTGCGGGGGCAGAGGCACCACGGTTGAATTGTGTGAACTCGGTGGCGGCGATTACCCGGCGGTAGCGCGCCAATGCCAAAGCCGTCGCGCAACAGC                                                                                                                 >  5:142722/1‑126
                                                               CGCACCAGGAGGTGCTGAGCTTGCTGCAGGCTGCGGGGGCAGAGGCACCACGGTTGAATTGTGTGAACTCGGTGGCGGCGATTACCCGGCGGTAGCGCGCCAATGCCAAAGCCGTCGCGCAACAGC                                                                                                                 <  6:142722/126‑1
                                                                                                                                                       GCGGTAGCGCGCCAATGCCAAAGCCGTCTCGCAACAGCCGTGTAATCTCCGCCACCGAGTTCACACATTTCAACCGTGGTGCCTCTGCCCCCGCAGCCTGCAGCAAGCTCAGGACCTCCTGGTGCGGCGGTTAATTCTTCGAGAAGGTG  <  8:143746/149‑1
                                                                                                                                                                                                                                                                                                            
ACTATGCGTCGCTGGCCGAACTTGGGCGCGAGCGCATCATCACCTTCTCGAAGAATTCACGGCCGCACCAGGAGGTGCTGAGCTTGCTGCAGGCTGCGGGGGCAGAGGCACCACGGTTGAATTGTGTGAACTCGGTGGCGGCGATTACCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5199243‑5199395
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcGGTAGCGCGCCAATGCCAAAGCCGTCGCGCAACAGCCGGGTAATCGCCGCCACCGAGTTCACACAATTCAACCGTGGTGCCTCTGCCCCCGCAGCCTGCAGCAAGCTCAGCACCTCCTGGTGCGGCCGTGAATTCTTCGAGAAGGTG  <  NC_002947/5199429‑5199283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.