New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5663477	64 (1.130)	3 (0.060)	3/242	NT	5.0%	coding (251/1179 nt)	PP_4971	outer membrane‑bound lytic murein transglycolase A
	?	NC_002947	= 5663511	53 (1.000)					coding (285/1179 nt)	PP_4971	outer membrane‑bound lytic murein transglycolase A

GCGAGAGCGCCAAGCCCGAGCCCCACGCTGTCGCCACCTATGCCCCGGCCACTTGGAAAGACTTGCCGCCCGTCAGCGATGAAGACCTGCTGGCAGGCTTTTATGCATGGCGCAACGGCTGCGAAAAACTCAAGCGCGACCCGGTGTGGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5663324‑5663477 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcggcGCTGGCTGTGGCGCTGCCGGCCGCTTCGCAGGTGGCCGCCCACACCGGGTCGCGCTTGAGTTTTTCGCAGCCGTTGCGCCATGCATAAAAGCCTGCCAGCAGGTCTTCATCGCTGACGGGCGGCAAGTCTTTCCAAGTGGCCGGGG  <  NC_002947/5663511‑5663366                                                                                                                                                                                                                                                                                                              tCGAGAGCGCCAAGCCCGAGCCCCACGCTGTCGGCACCTATGCCCCGGCCACTTGGAAAGACTTGCCGCCCGTCAGCGATGAAGACCTGCTGGCAGGCTTTTATGCATGGCGCAACGGCTGCGAAAAACTCAAGCGCGACCCGGTGTGG                                                                                                                                                         <  3:262264/148‑1  CGAGAGCGCCAAGCCCGAGCCCCACGCTGTCGCCACCTATGCCCCGGCCACTTGGAAAGACTTGCCGCCCGTCAGCGATGAAGACCTGCTGGCAGGCTTTTATGCATGGCGCAACGGCTGCGAAAAACTCAAGCGCGACCCGGTGTGGG                                                                                                                                                        >  5:307644/1‑149    AGAGCGCCAAGCCCGAGCCCCACGCTGTCGCCACCTATGCCCCGGCCACTTGGAAAGACGAGCCGCCCGTCAGCGATGAAGACCTGCTGGCAGGCTTTTATGCATGGCGCAACGGCTGCGAAAAACTCAAGCGCGACCCGGTGTGGGCG                                                                                                                                                      <  3:119611/149‑1      AGCGCCAAGCCCGAGCCCCACGCTGTCGCCACCTATGCCCCGGCCACTTGGAAAGACTTGCCGCCCGTCAGCGATGAAGACCTGCTGGCAGGCTTTTATGCATGGCGCAACGGCTGCGAAAAACTCAAGCGCGACCCGGTGTGGGCGGC                                                                                                                                                    >  5:130631/1‑149                                              CGGCCACTTGGAAAGACTTGCCGCCCGTCAGCGATGAAGACCTGCTGGCAGGCTTTTATGCATGGCGCAACGGCTGCGAAAAACTCCAGCGCGACCCGGTGTGGGCGGCGCTGGCTGTGGCGCTGCCGGCCGCTTCGCAGGTGGCCGCC                                                                                                            <  8:186055/149‑1                                                             ACTTGCCGCCCGTCAGCGATGAAGACCTGCTGGCAGGCTTTTATGCATGGCGCAACGGCTGCGAAAAACTCAAGCGCGACCCGGTGTGGGCGGCGCTGGCTGTGGCGCTGCCGGCCGCTTCGCAGGTGGCCGCCCACA                                                                                                        >  1:242508/1‑138                                                             ACTTGCCGCCCGTCAGCGATGAAGACCTGCTGGCAGGCTTTTATGCATGGCGCAACGGCTGCGAAAAACTCAAGCGCGACCCGGTGTGGGCGGCGCTGGCTGTGGCGCTGCCGGCCGCTTCGCAGGTGGCCGCCCACA                                                                                                        <  2:242508/138‑1                                                                                                                                                      GCGGCGCTGGCTGTGGCGCTGCCGGCCGCTTCGCAGGTGGCCGCCCACACCGGGTCGCGCTTGAGTTTTTCGCAGCCGTTGCGCCATGCATAAAAGCCTGCCAGCAGGTCTTCATCGCTGACGGGCGGCAAGTCTTTCCAAGTGGCCGG    >  5:101257/1‑149                                                                                                                                                       CGGCGCTGGCTGTGGCGCTGCCGGCCGCTTCGCAGGTGGCCGCCCACACCGGGTCGCGCTTGAGTTTTTCGCAGCCGTTGCGCCATGCATAAAAGCCTGCCAGCAGGTCTTCATCGCTGACGGGCGGCAAGTCTTTCCAAGTGGCCGGG   <  6:229564/149‑1                                                                                                                                                        GGCGCTGGCTGTGGCGCTGCCGGCCGCTTCGCAGGTGGCCGCCCACACCGGGTCGCGCTTGAGTTTTTCGCAGCCGTTGCGCCATGCATAAAAGCCTGCCAGCAGGTCTTCATCGCTGACGGGCGGCAAGTCTTTCCAAGTGGCCGGGG  <  2:171180/149‑1                                                                                                                                                                                                                                                                                                              GCGAGAGCGCCAAGCCCGAGCCCCACGCTGTCGCCACCTATGCCCCGGCCACTTGGAAAGACTTGCCGCCCGTCAGCGATGAAGACCTGCTGGCAGGCTTTTATGCATGGCGCAACGGCTGCGAAAAACTCAAGCGCGACCCGGTGTGGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5663324‑5663477 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcggcGCTGGCTGTGGCGCTGCCGGCCGCTTCGCAGGTGGCCGCCCACACCGGGTCGCGCTTGAGTTTTTCGCAGCCGTTGCGCCATGCATAAAAGCCTGCCAGCAGGTCTTCATCGCTGACGGGCGGCAAGTCTTTCCAAGTGGCCGGGG  <  NC_002947/5663511‑5663366

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.