New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 400298	41 (0.730)	3 (0.050)	3/250	NT	9.0%	intergenic (+33/‑117)	PP_0333/PP_0334	hypothetical protein/transposase
	?	NC_002947	= 3967945	21 (0.380)					coding (73/1179 nt)	PP_3498	transposase

GTGGACCGCAGCAACTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCT  >  NC_002947/400152‑400446                                                                                                                                                    |                                                                                                                                                     gtggACCGCAGCAACTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGAc                                                                                                                                                    <  2:341002/149‑1 (MQ=255)                  cAACTACCCGCTGCTGGTGGGTTCCACGGCGCTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGc                                                                                                                                    <  8:161531/148‑1 (MQ=255)                       aCCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATca                                                                                                                                >  3:3835/1‑147 (MQ=255)                         ccGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCTGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGt                                                                                                                            >  7:315963/1‑149 (MQ=255)                         ccGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCccgccg                                                                                                                                        >  1:343693/1‑137 (MQ=255)                         ccGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCccgccg                                                                                                                                        <  2:343693/137‑1 (MQ=255)                         ccGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGt                                                                                                                            >  3:192497/1‑149 (MQ=255)                               ctgGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACg                                                                                                                      >  6:104309/1‑149 (MQ=255)                                   tggGTTCCAAGGCGCTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGACAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTCCCACggtgg                                                                                                                  <  5:359583/149‑1 (MQ=255)                                       ttCCAAGGCGCTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCTCAGTGCCACGGTGGTGtt                                                                                                              <  7:318333/149‑1 (MQ=255)                                         ccAAGGCGCTGCGCGAGTTCAAGGCGGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATca                                                                                                                                >  1:198833/1‑130 (MQ=255)                                         ccAAGGCGCTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATca                                                                                                                                <  2:198833/129‑1 (MQ=255)                                           aaGGCGCTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCg                                                                                                            >  1:23851/1‑147 (MQ=255)                                           aaGGCGCTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCg                                                                                                            >  8:97418/1‑147 (MQ=255)                                              gcgcTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCgaagaa                                                                                                       <  4:3835/149‑1 (MQ=255)                                                gcTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGc                                                                                                     <  2:343491/149‑1 (MQ=255)                                                 cTGCTCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGcc                                                                                                    <  1:50622/149‑1 (MQ=255)                                                        aGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCa                                                                                             <  7:97418/149‑1 (MQ=255)                                                               ggc‑ggcGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAggg                                                                                      <  2:220178/149‑1 (MQ=255)                                                                     cggTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCgaga                                                                                 <  2:23851/149‑1 (MQ=255)                                                                         cAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagtccat                                                                             <  3:219304‑M1/149‑74 (MQ=255)                                                                             ccGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACTGCAGCGAGGGCGAGACCATGaa                                                                          >  6:108317/1‑148 (MQ=255)                                                                                  gaagaaGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCa                                                                    >  4:320530/1‑149 (MQ=255)                                                                                       agTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGtt                                                               <  7:99764/149‑1 (MQ=255)                                                                                            aCTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGaaa                                                          >  7:276811/1‑149 (MQ=255)                                                                                              tgctgGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAaca                                                        >  5:127313/1‑149 (MQ=255)                                                                                                ctgGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAacac                                                       <  6:127313/148‑1 (MQ=255)                                                                                                  ggCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagtccatcgattaca                                                                     <  5:191747‑M1/132‑82 (MQ=255)                                                                                                  ggCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagtccatcgattaca                                                                     >  6:191747‑M1/1‑51 (MQ=255)                                                                                                   gcaagcaaGGGTGCTGATCTGAAGCGTGAGCCATACAATGTAATAGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACAAGAt                                                    >  1:50160/1‑148 (MQ=255)                                                                                                   gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGaaa                                                                         <  2:159278/127‑1 (MQ=255)                                                                                                   gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGaaa                                                                         >  1:159278/1‑127 (MQ=255)                                                                                                   gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGAtt                                                   >  1:286138/1‑149 (MQ=255)                                                                                                       gCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCt                                               <  4:192497/149‑1 (MQ=255)                                                                                                       gCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCt                                               <  2:286138/149‑1 (MQ=255)                                                                                                           gggTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCt                                           <  8:103830/149‑1 (MQ=255)                                                                                                                   aTCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTg                                    <  1:196699/148‑1 (MQ=255)                                                                                                                               cgtcATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCttt                        <  8:276811/145‑1 (MQ=25)                                                                                                                               cgcCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCttt                        <  7:84530/148‑1 (MQ=38)                                                                                                                                 ccATACAATGTAATCGATGGACTCGACCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTATTCCACTGATGTGGAGCTTTGca                     >  3:207015/1‑149 (MQ=25)                                                                                                                                       aaTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAACCACGATTCCCTGTCt                                           <  4:33611/121‑1 (MQ=14)                                                                                                                                       aaTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCt                                           >  3:33611/1‑121 (MQ=31)                                                                                                                                       aaTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAAcc                >  8:323422/1‑148 (MQ=31)                                                                                                                                       aaTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCa               >  7:86561/1‑149 (MQ=31)                                                                                                                                       aaTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTAGAAGAAGCCAACGGCAGCGAGGGAGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCa               >  5:251969/1‑149 (MQ=14)                                                                                                                                                 aTGGtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagtccatcgattacacctgatcggggtggacacacatcggtttagcggccaagaggccctgcccggcgaactcagtgcg     >  6:136109‑M1/1‑4 (MQ=255)                                                                                                                                                    gtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagtccatcgattagacctgatcggggtggacacacatcggtttagcggccaagaggccctgcccggcgaactcagtgcggtc  >  7:233804‑M1/1‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GTGGACCGCAGCAACTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGC‑GGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCT  >  NC_002947/400152‑400446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.