| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 400298 | 41 (0.730) | 3 (0.050) | 3/250 | NT | 9.0% | intergenic (+33/‑117) | PP_0333/PP_0334 | hypothetical protein/transposase |
| ? | NC_002947 | = 3967945 | 21 (0.380) | coding (73/1179 nt) | PP_3498 | transposase | |||||
GACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGA > NC_002947/3967798‑3968021 | gACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTCTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAc > 7:233804‑M2/1‑148 (MQ=255) cGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccat > 6:136109‑M2/1‑145 (MQ=255) acttgggcGGGCTGGGCCTCTTGGCCGCTAAACCCCTGTGTCTCCACCCCCTACTGGTGTCATCGATGGACTCGCCCCCGCCGAGTCATCACAGTGCCACGGTTGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGaaaaa < 4:182266/141‑1 (MQ=17) aGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAg > 1:246813/1‑149 (MQ=255) gCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAg > 3:305764/1‑149 (MQ=255) ggCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTc > 4:55020/1‑148 (MQ=255) gCATGGCCTCTAGGCCGCTAAACCGATGTGTGTCCACACCGATCAGTTGTAATCGATGGACTATCCCCCGCCTAGTCATCACAGTCCCACGGTGGTGTTAGAAGAAGCCAACGTCAGCGAGGGCGAGACCATGAAAAAGAATAgagaac > 2:358847/1‑144 (MQ=18) gCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATa < 1:358847/143‑1 (MQ=255) ggCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTc < 6:232922/143‑1 (MQ=255) ggCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTc > 5:232922/1‑143 (MQ=255) ccTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAacac > 5:46557/1‑148 (MQ=255) ggCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGAtt < 8:307755/146‑1 (MQ=255) gCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCt < 3:137093/149‑1 (MQ=255) gCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCt < 3:314650/149‑1 (MQ=255) cGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGt > 1:167103/1‑149 (MQ=255) cGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGt > 1:172471/1‑149 (MQ=255) ccGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCAc < 2:172471/149‑1 (MQ=255) ccGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCAc < 2:167103/149‑1 (MQ=255) tgtCCACCCCGATCAGGTGTAATCGATGGACTCGCCCGCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACCCGATTCCCTGTCTTCCACTGAtgtg < 7:230635/148‑1 (MQ=255) ccccGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCttt < 3:55020/149‑1 (MQ=38) cccGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTg > 6:138270/1‑149 (MQ=38) ccGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGc < 2:246813/149‑1 (MQ=37) gtgtAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCAt > 1:163310/1‑149 (MQ=11) tgtAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccatcgattacattgtatggcgcacgcttcagatcagcaccctggcttgcc < 5:191747‑M2/132‑52 (MQ=255) tgtAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccatcgattacattgtatggcgcacgcttcagatcagcaccctggcttgcc > 6:191747‑M2/1‑81 (MQ=255) aTGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccatcgattacattgtatggcgcacgcttcagatcagcaccctggcttgccagcagtgaacttcttcgccgggttg < 3:219304‑M2/149‑77 (MQ=255) | GACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGA > NC_002947/3967798‑3968021 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |