| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 707277 = | 51 (0.900) | 3 (0.060) | 3/244 | NT | 6.2% | coding (72/279 nt) | rpsT | 30S ribosomal protein S20 |
| ? | NC_002947 | 707313 = | 43 (0.800) | coding (36/279 nt) | rpsT | 30S ribosomal protein S20 | |||||
GAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACTTTAGGTAAATAGCAAACAAAATAGGCCGCGAATCATGCCGATCAGTCGAGCG > NC_002947/707129‑707421 | gAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGc < 3:75648/149‑1 (MQ=255)gAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGc < 8:134936/149‑1 (MQ=255) gcagcCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAg > 8:296268/1‑149 (MQ=255) caccgctcggcggaaccttgcaggtggccttgacatccgctcgactgatcggcatgattcgcggcctattttgtttgctatttacctaaagtctttcgaggagctcgacggtggccaacacaccttccgccaagaaacgtgcaaaaCAg > 2:62202‑M1/147‑149 (MQ=255) gcCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCt < 7:296268/149‑1 (MQ=255) gcCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCt > 2:334677/1‑149 (MQ=255) ttGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTtgtg > 3:119277/1‑149 (MQ=255) gtgGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTtgt < 7:49067/146‑1 (MQ=255) ggATGTTACCCTTGTCGTCCATACGGTCGATTAGAGGTAGAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTGTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGGAGGCTGGCGTTGTGGCt < 6:66377/148‑1 (MQ=255) gatgatACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTg < 4:102338/148‑1 (MQ=255) atgatACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGc > 7:225755/1‑148 (MQ=255) atgatACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCg > 2:134789/1‑149 (MQ=255) tACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGc > 2:306487/1‑149 (MQ=255) cccTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGTCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCtt < 6:320924/149‑1 (MQ=255) ccTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTCCCCATTTTCGCGGTCATATGCGTCGATGGCTTTAACAACATTCTTCAACTACGTGCGGACCATAGAACGCAGGCTGGCGTTGTGGCTGCG‑Acccat > 2:330074/1‑144 (MQ=255) tCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGc < 1:334677/149‑1 (MQ=255) tCGGCCATACGGGAGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTCCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCTGACCATGGAACGCAGGCTGGCGCTGTGGCTGCG‑ACGCTTCTCAg < 3:98019/148‑1 (MQ=255) cATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGtt < 8:225755/149‑1 (MQ=255) aCGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTg > 6:178226/1‑149 (MQ=255) ctcgactgatcggcatgattcgcggcctattttgtttgctatttacctaaagtctttcgaggagctcgacggtggccaacacaccttccgccaagaaacgtgcaaaaCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTATTTTGc > 2:64807‑M1/108‑149 (MQ=255) tCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACg > 6:301176/1‑149 (MQ=255) gATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGtt > 1:67291/1‑149 (MQ=255) atcggcatgattcgcggcctattttgtttgctatttacctaaagtctttcgaggagctcgacggtggccaacacaccttccgccaagaaacgtgcaaaaCAgg > 7:18084‑M1/100‑103 (MQ=255) atcggcatgattcgcggcctattttgtttgctatttacctaaagtctttcgaggagctcgacggtggccaacacaccttccgccaagaaacgtgcaaaaCAgg < 8:18084‑M1/4‑1 (MQ=255) cAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATTTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCtt < 1:306487/148‑1 (MQ=255) gTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTtgt < 5:102367/108‑1 (MQ=255) gTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTtgt > 6:102367/1‑108 (MQ=255) ccAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGgt < 5:178226/149‑1 (MQ=255) cAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGgtg < 1:134789/149‑1 (MQ=255) gAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGCACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGgtgtg < 5:178277/149‑1 (MQ=255) gAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGgtgtg < 2:67291/149‑1 (MQ=255) cGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTg > 5:327889/1‑149 (MQ=255) tattttgtttgctatttacctaaagtctttcgaggagctcgacggtggccaacacaccttccgccaagaaacgtgcaaaaCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCa > 1:121724‑M1/81‑123 (MQ=255) tattttgtttgctatttacctaaagtctttcgaggagctcgacggtggccaacacaccttccgccaagaaacgtgcaaaaCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCa < 2:121724‑M1/43‑1 (MQ=255) aaGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGt < 3:132562/125‑1 (MQ=255) aaGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGt > 4:132562/1‑125 (MQ=255) cGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCAcc < 5:301176/149‑1 (MQ=255) cTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTc < 6:327889/149‑1 (MQ=255) ttGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCGTACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTg < 1:80841/140‑1 (MQ=255) ttGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTg > 2:80841/1‑139 (MQ=255) gcgcTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGa < 4:119277/148‑1 (MQ=255) gcgcTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAg > 5:127960/1‑149 (MQ=255) cgcTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGc > 5:113927/1‑149 (MQ=255) gTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCGTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGTGCGGCGCGAAAgcc > 4:115184/1‑147 (MQ=255) ttttGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGcc < 2:246660/124‑1 (MQ=255) cTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACTTTAGGTAAATAGcaaa < 6:113927/149‑1 (MQ=255) tACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACTTTa > 2:215809/1‑129 (MQ=255) tACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACTTTa < 1:215809/129‑1 (MQ=255) aCATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACTTTAGGTAAATAGCAAACaaaa > 5:261488/1‑146 (MQ=255) aCATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACTTTAGGTAAATAGCAAACAAAATa < 6:261488/148‑1 (MQ=255) cATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAATGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACTTTAGGTAAATAGCAAACAAAATa < 1:252406/147‑1 (MQ=255) cATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGTCACCGTCGAGCTCCTCGAAAGACTTTAGGTAAATAGCAAACAAAATa < 1:259051/147‑1 (MQ=255) ttCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACTTTAGGTAAATAGCAAACAAAATAGGcc < 6:127960/149‑1 (MQ=255) ttGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGAGTTTAGGTAAATAGCTAACAAAATAggcggc > 8:261583/1‑148 (MQ=255) ttGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACTTTAGGTAAATAGCAAACAAAATAGGCcgc > 4:127754/1‑148 (MQ=255) gTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGCCTGCG‑ACGATTCACAGCCTGTTTTGCACGTAACTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACATAAGCTAAATAGCAAACAAAATAGGCGGCGAATc > 2:98522/1‑148 (MQ=255) gACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACTTTAGGTAAATAGCAAACAAAATAGGCCGCGAATCATGCCGATCa > 7:139286/1‑149 (MQ=255) ccATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACTTTAGGTAAATAGc < 1:174800/116‑1 (MQ=255) ccATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACTTTAGGTAAATAGc > 2:174800/1‑116 (MQ=255) tgataaaCGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACTTTAGGTAAATAGCAAACAAAATAGGCCGCGAATCATGCCGATCAGt < 5:81998/143‑1 (MQ=255) ggAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACTTTAGGTAAATAGCAAACAAAATAGGCCGCGAATCATGCCGATCAGTCGAg > 1:159585/1‑149 (MQ=255) aCGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACTTTAGGTAAATAGCAAACAAAATAGGCCGCGAATCATGCCGATCAGTCGAGCg > 7:95817/1‑148 (MQ=255) | GAGCAGCCTTGTTCTTGTGGATGATACCCTTGTCGGCCATACGGTCGATTACAGGTACAGCCAGAACGTAAGCGGCTTGCGCTTTTTCGGCGTCTTTTGCGTCGATGGCTTTAACTACATTCTTGATGTAGGTGCGGACCATGGAACGCAGGCTGGCGTTGTGGCTGCG‑ACGCTTCTCAGCCTGTTTTGCACGTTTCTTGGCGGAAGGTGTGTTGGCCACCGTCGAGCTCCTCGAAAGACTTTAGGTAAATAGCAAACAAAATAGGCCGCGAATCATGCCGATCAGTCGAGCG > NC_002947/707129‑707421 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |