New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1408922 =	49 (0.870)	3 (0.060)	3/244	NT	6.0%	coding (1375/1509 nt)	PP_1230	hypothetical protein
	?	NC_002947	1408955 =	47 (0.880)					coding (1408/1509 nt)	PP_1230	hypothetical protein

TCGCTGTCCAAGCCGATGATCGGTGACCTGGCGACCTTGCAGGCCTTGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCT  >  NC_002947/1408778‑1409067                                                                                                                                                 |                                                                                                                                                  tcgctgtcCAAGCCGATGATCGGTGACCTGGCGACCTTGCAGGCCTTGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTg                                                                                                                                                 <  5:294694/147‑1 (MQ=255)   gctgtcCAAGCCGATGCTCGGGGACCTGGCGACCTTGCAGGCCTTGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAgg                                                                                                                                             <  4:234052/149‑1 (MQ=255)        ccAAGCCGATGATCGGTGACCTGGCGACCTTGCAGGCCTTGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCgat                                                                                                                                        >  4:200115/1‑149 (MQ=255)           aGCCGATGATCGGTGACCTGGCGACCTTGCAGGCCTTGCTGGATGGCCAGACCGACTCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCgatgat                                                                                                                                     <  2:52649/149‑1 (MQ=255)           aGCCGATGATCGGTGACCTGGCGACCTTGCAGGCCTTGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCgatgat                                                                                                                                     <  7:288790/149‑1 (MQ=255)               gatgatCGGTGACCTGGCGACCTTGCAGGCCTTGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTgg                                                                                                                                 <  3:200115/149‑1 (MQ=255)                   atCGGTGACCTGGCGACCTTGCAGGCCTTGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTcag                                                                                                                             <  3:264093/149‑1 (MQ=255)                             tGGCGACCTTGCAGGCCTTGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCAc                                                                                                                   >  2:346804/1‑149 (MQ=255)                               gCGACCTTGCAGGCCTTGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACt                                                                                                                  <  3:251653/148‑1 (MQ=255)                                  gagaaaccatcacccctgcggcgacagggcccccagatgcgccgccatgaacatggcaaattcttcaacggtcatttttcggccattgaaatcgaccatgccatcggcataGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGc                                                                                                              >  6:142734‑M1/112‑149 (MQ=255)                                       gCAGGCCTTGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATg                                                                                                         >  6:309571/1‑149 (MQ=255)                                           atcacccctgcggcgacagggcccccagatgcgccgccatgaacatggaaattcttcaacggtcatttttcggccattgaaatcgaccatgccatcggcataGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTAt                                                                                                                <  1:24615‑M1/36‑1 (MQ=255)                                           atcacccctgcggcgacagggcccccagatgcgccgccatgaacatggaaattcttcaacggtcatttttcggccattgaaatcgaccatgccatcggcataGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTAt                                                                                                                >  2:24615‑M1/103‑138 (MQ=255)                                              ttGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGAt                                                                                                          <  4:302437/141‑1 (MQ=255)                                              ttGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGAt                                                                                                          >  3:302437/1‑141 (MQ=255)                                                          cAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATgg                                                                                      <  8:308265/149‑1 (MQ=255)                                                               cGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGa                                                                                  >  1:163489/1‑148 (MQ=255)                                                                     ccAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGa                                                                           >  3:175468/1‑149 (MQ=255)                                                                      cAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAAt                                                                                        <  8:197950/135‑1 (MQ=255)                                                                      cAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAAt                                                                                        >  7:197950/1‑135 (MQ=255)                                                                        aGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCg                                                                        <  6:128057/149‑1 (MQ=255)                                                                           gATTGCCATGCACTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTCGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGtt                                                                      >  2:135776/1‑148 (MQ=255)                                                                                ccATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTgaagaa                                                                >  1:61904/1‑149 (MQ=255)                                                                                    gCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTg                                                            >  3:233753/1‑149 (MQ=255)                                                                                      aGTCGAGACAGGCGGTGGAGATGGTAGGCATTATGTAGCTGAAGAGCTGCTTGGCCACCTTGCAGGGAGATGATGTGGTCAGAAGCCTGCACTATTCCGATGGCATTGTCGATTTCAATGTCAGAAAAATGACCGTTGAAGAAttttc                                                           >  5:219090/1‑146 (MQ=255)                                                                                        tCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCAt                                                        >  5:69181/1‑149 (MQ=255)                                                                                        tCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCAt                                                        >  5:185883/1‑149 (MQ=255)                                                                                          gAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGt                                                      <  6:137503/149‑1 (MQ=255)                                                                                          gAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGACCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGt                                                      <  5:309571/149‑1 (MQ=255)                                                                                            gCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTc                                                    <  1:346804/149‑1 (MQ=255)                                                                                                  cGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACGGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATggcg                                              <  1:135776/149‑1 (MQ=255)                                                                                                   gggggAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGAc                                                                          <  8:227164/120‑1 (MQ=255)                                                                                                   gggggAGATGGTCGGCATGATGACGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGAc                                                                          >  7:227164/1‑120 (MQ=255)                                                                                                     gggAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGgcggcg                                           >  3:38177/1‑149 (MQ=255)                                                                                                       gagaTGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCa                                         >  4:335809/1‑149 (MQ=255)                                                                                                             gTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTggg                                   >  4:131442/1‑149 (MQ=255)                                                                                                              tCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTgggg                                  <  2:163489/149‑1 (MQ=255)                                                                                                                 gCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGcc                               >  8:276925/1‑149 (MQ=255)                                                                                                                 gCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGcc                               <  3:131442/149‑1 (MQ=255)                                                                                                                 gCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGcc                               >  1:105330/1‑149 (MQ=255)                                                                                                                     gatgGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGt                           >  1:146146/1‑149 (MQ=255)                                                                                                                      atgGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAAt                                                                             <  3:699/98‑1 (MQ=255)                                                                                                                      atgGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAAt                                                                             >  4:699/1‑98 (MQ=255)                                                                                                                        ggCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTcgc                        >  6:46820/1‑149 (MQ=255)                                                                                                                         gcgcTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCCGCGCATCTGGGGGCCCTGTcgc                        <  7:228013/148‑1 (MQ=255)                                                                                                                           gcTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTcgccgc                     <  7:276925/149‑1 (MQ=255)                                                                                                                           gcTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTcgc                        >  3:25296/1‑146 (MQ=255)                                                                                                                           gcTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTcgc                        <  4:25296/146‑1 (MQ=255)                                                                                                                               cAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAg                   <  5:46820/147‑1 (MQ=255)                                                                                                                               cAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAg                   <  2:61904/147‑1 (MQ=255)                                                                                                                                    cGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGAt            <  4:38177/149‑1 (MQ=255)                                                                                                                                    cGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGAt            <  3:190325/149‑1 (MQ=255)                                                                                                                                       cATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGt         >  5:232659/1‑149 (MQ=255)                                                                                                                                             cACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTcc   >  1:341487/1‑149 (MQ=255)                                                                                                                                              aCCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCt  >  1:334881/1‑149 (MQ=255)                                                                                                                                              aCCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCt  <  2:105330/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  TCGCTGTCCAAGCCGATGATCGGTGACCTGGCGACCTTGCAGGCCTTGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCT  >  NC_002947/1408778‑1409067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.