New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1408922 =49 (0.870)3 (0.060) 3/244 NT 6.0% coding (1375/1509 nt) PP_1230 hypothetical protein
?NC_002947 1408955 = 47 (0.880)coding (1408/1509 nt) PP_1230 hypothetical protein

GCGACCTTGCAGGCCTTGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCG  >  NC_002947/1408808‑1409094
                                                                                                                                                   |                                                                                                                                           
gCGACCTTGCAGGCCTTGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACt                                                                                                                                             <  3:251653/148‑1 (MQ=255)
   gagaaaccatcacccctgcggcgacagggcccccagatgcgccgccatgaacatggcaaattcttcaacggtcatttttcggccattgaaatcgaccatgccatcggcataGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGc                                                                                                                                         >  6:142734‑M1/112‑149 (MQ=255)
        gCAGGCCTTGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATg                                                                                                                                    >  6:309571/1‑149 (MQ=255)
            atcacccctgcggcgacagggcccccagatgcgccgccatgaacatggaaattcttcaacggtcatttttcggccattgaaatcgaccatgccatcggcataGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTAt                                                                                                                                           <  1:24615‑M1/36‑1 (MQ=255)
            atcacccctgcggcgacagggcccccagatgcgccgccatgaacatggaaattcttcaacggtcatttttcggccattgaaatcgaccatgccatcggcataGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTAt                                                                                                                                           >  2:24615‑M1/103‑138 (MQ=255)
               ttGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGAt                                                                                                                                     >  3:302437/1‑141 (MQ=255)
               ttGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGAt                                                                                                                                     <  4:302437/141‑1 (MQ=255)
                           cAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATgg                                                                                                                 <  8:308265/149‑1 (MQ=255)
                                cGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGa                                                                                                             >  1:163489/1‑148 (MQ=255)
                                      ccAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGa                                                                                                      >  3:175468/1‑149 (MQ=255)
                                       cAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAAt                                                                                                                   >  7:197950/1‑135 (MQ=255)
                                       cAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAAt                                                                                                                   <  8:197950/135‑1 (MQ=255)
                                         aGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCg                                                                                                   <  6:128057/149‑1 (MQ=255)
                                            gATTGCCATGCACTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTCGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGtt                                                                                                 >  2:135776/1‑148 (MQ=255)
                                                 ccATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTgaagaa                                                                                           >  1:61904/1‑149 (MQ=255)
                                                     gCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTg                                                                                       >  3:233753/1‑149 (MQ=255)
                                                       aGTCGAGACAGGCGGTGGAGATGGTAGGCATTATGTAGCTGAAGAGCTGCTTGGCCACCTTGCAGGGAGATGATGTGGTCAGAAGCCTGCACTATTCCGATGGCATTGTCGATTTCAATGTCAGAAAAATGACCGTTGAAGAAttttc                                                                                      >  5:219090/1‑146 (MQ=255)
                                                         tCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCAt                                                                                   >  5:69181/1‑149 (MQ=255)
                                                         tCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCAt                                                                                   >  5:185883/1‑149 (MQ=255)
                                                           gAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGt                                                                                 <  6:137503/149‑1 (MQ=255)
                                                           gAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGACCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGt                                                                                 <  5:309571/149‑1 (MQ=255)
                                                             gCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTc                                                                               <  1:346804/149‑1 (MQ=255)
                                                                   cGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACGGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATggcg                                                                         <  1:135776/149‑1 (MQ=255)
                                                                    gggggAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGAc                                                                                                     <  8:227164/120‑1 (MQ=255)
                                                                    gggggAGATGGTCGGCATGATGACGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGAc                                                                                                     >  7:227164/1‑120 (MQ=255)
                                                                      gggAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGgcggcg                                                                      >  3:38177/1‑149 (MQ=255)
                                                                        gagaTGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCa                                                                    >  4:335809/1‑149 (MQ=255)
                                                                              gTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTggg                                                              >  4:131442/1‑149 (MQ=255)
                                                                               tCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTgggg                                                             <  2:163489/149‑1 (MQ=255)
                                                                                  gCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGcc                                                          >  1:105330/1‑149 (MQ=255)
                                                                                  gCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGcc                                                          >  8:276925/1‑149 (MQ=255)
                                                                                  gCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGcc                                                          <  3:131442/149‑1 (MQ=255)
                                                                                      gatgGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGt                                                      >  1:146146/1‑149 (MQ=255)
                                                                                       atgGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAAt                                                                                                        <  3:699/98‑1 (MQ=255)
                                                                                       atgGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAAt                                                                                                        >  4:699/1‑98 (MQ=255)
                                                                                         ggCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTcgc                                                   >  6:46820/1‑149 (MQ=255)
                                                                                          gcgcTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCCGCGCATCTGGGGGCCCTGTcgc                                                   <  7:228013/148‑1 (MQ=255)
                                                                                            gcTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTcgccgc                                                <  7:276925/149‑1 (MQ=255)
                                                                                            gcTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTcgc                                                   >  3:25296/1‑146 (MQ=255)
                                                                                            gcTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTcgc                                                   <  4:25296/146‑1 (MQ=255)
                                                                                                cAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAg                                              <  2:61904/147‑1 (MQ=255)
                                                                                                cAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAg                                              <  5:46820/147‑1 (MQ=255)
                                                                                                     cGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGAt                                       <  3:190325/149‑1 (MQ=255)
                                                                                                     cGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGAt                                       <  4:38177/149‑1 (MQ=255)
                                                                                                        cATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGt                                    >  5:232659/1‑149 (MQ=255)
                                                                                                             gcatagtgcaggctgctgaccacatcatcgccctgcacTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTtctc                               >  6:142734‑M2/39‑149 (MQ=255)
                                                                                                              cACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTcc                              >  1:341487/1‑149 (MQ=255)
                                                                                                               atagtgcaggctgctgaccacatcatcgccctgcacTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGAt                                       <  1:24615‑M2/102‑1 (MQ=255)
                                                                                                               atagtgcaggctgctgaccacatcatcgccctgcacTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGAt                                       >  2:24615‑M2/37‑138 (MQ=255)
                                                                                                               aCCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCt                             >  1:334881/1‑149 (MQ=255)
                                                                                                               aCCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCt                             <  2:105330/149‑1 (MQ=255)
                                                                                                                       GGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGc                     >  7:132678‑M1/1‑149 (MQ=255)
                                                                                                                                 gtgGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCgg           >  6:294423/1‑149 (MQ=255)
                                                                                                                                  tgGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCggg          >  5:65653/1‑149 (MQ=255)
                                                                                                                                  tgGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCgg           <  6:109173/148‑1 (MQ=255)
                                                                                                                                       agcagcCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAAc     >  4:94355/1‑149 (MQ=255)
                                                                                                                                        gcagcCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAAcc    <  6:69181/149‑1 (MQ=255)
                                                                                                                                          agcCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCg  >  5:63346/1‑149 (MQ=255)
                                                                                                                                           gcCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATggcggc                                                                       <  3:247242/79‑1 (MQ=255)
                                                                                                                                           gcCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATggcggc                                                                       >  4:247242/1‑79 (MQ=255)
                                                                                                                                                   |                                                                                                                                           
GCGACCTTGCAGGCCTTGCTGGATGGCCAGACCGACGCCCAAGCGATTGCCATGCAGTCGAGCCAGGCGGGGGAGATGGTCGGCATGATGGCGCTGCAGAGCGGCATGGCCACCGTGCAGGGCGATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCG  >  NC_002947/1408808‑1409094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.