New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2155709 =	42 (0.740)	3 (0.060)	3/242	NT	6.4%	coding (151/1011 nt)	plsX	phosphate acyltransferase
	?	NC_002947	2155807 =	48 (0.910)					coding (249/1011 nt)	plsX	phosphate acyltransferase

GTCCGCTCAGGTCATCGCGATCGACGCAATGGGCGGGGACTTCGGTCCCCGCAGCATTGTCCAGGCTAGCATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑ATTCGTCGATGCGCATCGCCCTCGAACTGGTGCGCGACGGAA  >  NC_002947/2155561‑2155850                                                                                                                                                     |                                                                                                                                               cgccaccatggccggccggtcgatacccggcaaggtcttgagcacgaagcgcgacaacgccatcagcgccccggtattgccggcactgacacaggcctgggcttttccgtcgcgcaccagttcgagggcgatgcgcaacgacgaatccg                                                                                                                                                <  7:2501‑M1/1‑1 (MQ=255)    caccatggccggccggtcgatacccggcaaggtcttgagcacgaagcgcgacaacgccatcagcgccccggtattgccggcactgacacaggcctgggcttttccgtcgcgcaccagttcgagggcgatgcgcatcgacgaatccGGCt                                                                                                                                             >  4:323280‑M1/146‑149 (MQ=255)        atggccggccggtcgatacccggcaaggtcttgagcacgaagcgcgacaacgccatcagcgccccggtattgccggcactgacacaggcctgggcttttccgtcgcgcaccagttcgagggcgatgcgcatcgacgaatccGGCTTg                                                                                                                                           <  3:86993‑M1/6‑1 (MQ=255)                cgcgATCGACGCAATGGGCGGGGACTTCGGTCCCCGCAGCATTGTCCAGGCTAGCATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCtt                                                                                                                                            >  7:97574/1‑138 (MQ=255)                cgcgATCGACGCAATGGGCGGGGACTTCGGTCCCCGCAGCATTGTCCAGGCTAGCATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCtt                                                                                                                                            <  8:97574/138‑1 (MQ=255)                      cGACGCAATGGGCGGGGACTTCGGTCCCCGCAGCATTGTCCAGGCTAGCATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCCACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATcgcg                                                                                                                           >  8:64416/1‑149 (MQ=255)                         cGCAATGGGCGGGGACTTCGGTCCCCGCAGCATTGTCCAGGCTAGCATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATcgcgcgc                                                                                                                        <  4:213672/149‑1 (MQ=255)                           cAATGGGCGGGGACTTCGGTCCCCGCAGCATTGTCCAGGCTAGCATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCgcgcgcgc                                                                                                                      >  4:76117/1‑149 (MQ=255)                             aTGGGCGGGGACTTCGGTCCCCGCAGCATTGTCCAGGCTAGCATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCt                                                                                                                    <  4:160302/149‑1 (MQ=255)                                ggCGGGGACTTCGGTCCCCGCAGCATTGTCCAGGCTAGCATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTg                                                                                                                   >  5:196928/1‑147 (MQ=255)                                      gACTTCGGTCCCCGCAGCATTGTCCAGGCTAGCATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGAGCGCGCGCGCCTGCAGGTtgt                                                                                                           <  8:162520/149‑1 (MQ=255)                                         ttCGGTCCCCGCAGCATTGTCCAGGCTAGCATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCgcgcgcgc                                                                                                                      >  3:213353/1‑135 (MQ=255)                                         ttCGGTCCCCGCAGCATTGTCCAGGCTAGCATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCgcgcgcgc                                                                                                                      <  4:213353/135‑1 (MQ=255)                                                cccGCAGCATTGTCCAGGCTAGCATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGt                                                                                                 >  7:28061/1‑149 (MQ=255)                                                        aTTGTCCAGGCTAGCATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGt                                                                                         >  6:190772/1‑149 (MQ=255)                                                              cAGGCTAGCATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCa                                                                                    <  3:193828/148‑1 (MQ=255)                                                                ggCTAGCATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATg                                                                                  >  7:135794/1‑148 (MQ=255)                                                                      cATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGc                                                                           >  3:266388/1‑149 (MQ=255)                                                                        ttGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCgg                                                                         <  7:4692/149‑1 (MQ=255)                                                                                 tttCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAg                                                                <  4:266388/149‑1 (MQ=255)                                                                                   tCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAgg                                                               <  3:76117/148‑1 (MQ=255)                                                                                      gCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGtt                                                           >  2:3123/1‑149 (MQ=255)                                                                                        gacacaggcctgggcttttccgtcgcgcaccagttcgagggcgatgcgcatcgacgaatccGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTgc                                                         <  7:164554‑M1/88‑1 (MQ=255)                                                                                         acacaggcctgggcttttccgtcgcgcaccagttcgagggcgatgcgcatcgacgaatccGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTgcg                                                        >  8:164554‑M1/61‑149 (MQ=255)                                                                                           ccccTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGcgcg                                                      >  3:218034/1‑149 (MQ=255)                                                                                            cccTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCgg                                                     <  3:176343/149‑1 (MQ=255)                                                                                              cTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCa                                                   <  4:218034/149‑1 (MQ=255)                                                                                                 gCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAg                                                 <  4:11497/148‑1 (MQ=255)                                                                                                  cTTGATCTGACCCTCGTCTGTCATCCCTCCATCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGcc                                               <  8:135794/149‑1 (MQ=255)                                                                                                     cATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCg                                              <  5:190772/147‑1 (MQ=255)                                                                                                      cttttccgtcgcgcaccagttcgagggcgatgcgcatcgacgaatccGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑At                                          >  2:2434‑M1/48‑149 (MQ=255)                                                                                                      aTCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑At                                          >  4:26523/1‑149 (MQ=255)                                                                                                        cTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑ATtc                                        >  1:77471/1‑149 (MQ=255)                                                                                                           aCCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑ATtcgt                                      <  8:28061/148‑1 (MQ=255)                                                                                                           aCCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑ATtc                                        >  8:25810/1‑146 (MQ=255)                                                                                                           aCCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑ATtc                                        <  7:25810/146‑1 (MQ=255)                                                                                                                        aaCCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑ATTCGTCGATGCGCATCGcc                        <  6:196928/149‑1 (MQ=255)                                                                                                                               cctcctTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGTCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑ATTCGTCGATGCGCATCGCCCTCGaa                  <  7:64416/148‑1 (MQ=255)                                                                                                                               cctcctTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCg                                                                                       >  2:245825/1‑80 (MQ=255)                                                                                                                               cctcctTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCg                                                                                       <  1:245825/80‑1 (MQ=255)                                                                                                                               cctcctTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGGTATTCGTCGATGCGCATCGCCCTCGaa                  <  1:3123/149‑1 (MQ=255)                                                                                                                                    ttGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑ATTCGTCGATGCGCATCGCCCTCGAACTGGTg            >  6:253242/1‑149 (MQ=255)                                                                                                                                    ttGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑ATTCGTCGATGCGCATCGCCCTCGAACTGGTg            >  5:159463/1‑149 (MQ=255)                                                                                                                                      gAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑ATTCGTCGATGCGCATCGCCCTCGAACTGGTgcg          >  4:86719/1‑149 (MQ=255)                                                                                                                                         gATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑ATTCGTCGATGCGCATCGCCCTCGAACTGGTGCGCGa       >  7:173634/1‑149 (MQ=255)                                                                                                                                         gATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑ATTCGTCGATGCGCATCGCCCTCGAACTGGTGCGCGa       >  6:236377/1‑149 (MQ=255)                                                                                                                                           tctcATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑CTTCGTCGATGCGCATCGCCCTCGAACTGGTGCGCGACg     >  2:290426/1‑149 (MQ=255)                                                                                                                                               atcaGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑ATTCGTCGATGCGCATCGCCCTCGAACTGGTGCGCGAc      <  5:236377/144‑1 (MQ=255)                                                                                                                                               atcaGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑ATTCGTCGATGCGCATCGCCCTCGAACTGGTGCGCGACGGaa  >  8:274945/1‑148 (MQ=255)                                                                                                                                               atcaGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑ATTCGTCGATGCGCATCGCCCTCGAACTGGTGCGCGACGGaa  >  3:232132/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                               GTCCGCTCAGGTCATCGCGATCGACGCAATGGGCGGGGACTTCGGTCCCCGCAGCATTGTCCAGGCTAGCATTGCCTGCCTTTCGGCTACCCCCTCGCTTCATCTGACCCTCGTCGGTCAACCCTCCCTCCTTGAAGATCTCATCAGTGGCTTGCCAGCTGCGGATCGCGCGCGCCTGCAGGTTGTGGCCGCCAGTGAGGTAGTCGGCATGGACGAGCGGCCATCCCAGGCGTTGCGCGGCAAGCCGG‑ATTCGTCGATGCGCATCGCCCTCGAACTGGTGCGCGACGGAA  >  NC_002947/2155561‑2155850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.