New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2157010 =	42 (0.740)	4 (0.080)	4/242	NT	9.6%	coding (314/939 nt)	fabD	malonyl‑CoA‑ACP transacylase
	?	NC_002947	2157064 =	36 (0.680)					coding (368/939 nt)	fabD	malonyl‑CoA‑ACP transacylase

AACTTAACCAGACCGACAAGACCCAGCCGGCGATCCTTACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCTGGACGATGCTGTGGTCGTGGAACTCTGCGCCGAAGCCG  >  NC_002947/2156863‑2157150                                                                                                                                                     |                                                                                                                                              ccggcgatgaccacctgaccaggcgagttgaagttcacggcgctgaccacttcatcttcagcggcttcggcgcagagttccacgaccacagcatcgtccaggccgagaatggcagccatggcgccgtgaccggccggtacggcttcctg                                                                                                                                               <  8:256347‑M1/1‑1 (MQ=255) aaCTTAACCAGACCGACAAGACCCAGCCGGCGATCCTTACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGgcagc                                                                                                                                              <  8:128784/149‑1 (MQ=255)   cTTAACCAGACCGACAAGACCCAGCCGGCGATCCTTACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCAt                                                                                                                                            >  2:355271/1‑149 (MQ=255)    ttAACCAGACCGACAAGACCCAGCCGGCGATCCTTACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCAt                                                                                                                                            >  7:63494/1‑148 (MQ=255)    gcgatgaccacctgaccaggcgagttgaagttcacggcgctgaccacttcatcttcagcggcttcggcgcagagttccacgaccacagcatcgtccaggccgagaatggcagccatggcgccgtgaccggccggtacggcttcctGCAt                                                                                                                                            >  3:260723‑M1/146‑149 (MQ=255)     cgatgaccacctgaccaggcgagttgaagttcacggcgctgaccacttcatcttcagcggcttcggcgcagagttccacgaccacagcatcgtccaggccgagaatggcagccatggcgccgtgaccggccggtacggcttcctGCATc                                                                                                                                           >  4:162648‑M1/145‑149 (MQ=255)       atgaccacctgaccaggcgagttgaagttcacggcgctgaccacttcatcttcagcggcttcggcgcagagttccacgaccacagcatcgtccaggccgagaatggcagccatggcgccgtgaccggccggtacggcttcctGCATCAg                                                                                                                                         >  1:78413‑M1/143‑149 (MQ=255)          aGACCGACAAGACCCAGCCGGCGATCCTTACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCt                                                                                                                                      >  7:131779/1‑148 (MQ=255)           gACCGACAAGACCCAGCCGGCGATCCTTACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGa                                                                                                                                    <  8:112409/149‑1 (MQ=255)                 cAAGACCCAGCCGGCGATCCTTACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATg                                                                                                                              <  8:131779/149‑1 (MQ=255)                   aGACCCAGCCGGCGATCCTTACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAATCACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGc                                                                                                                             <  1:250079/149‑1 (MQ=255)                   aGACCCAGCCGGCGATCCTTACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGcc                                                                                                                            <  6:69561/149‑1 (MQ=255)                    gACCCAGCCGGCGATCCTTACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCAt                                                                                                                                            >  2:226518/1‑132 (MQ=255)                    gACCCAGCCGGCGATCCTTACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCAt                                                                                                                                            <  1:226518/132‑1 (MQ=255)                       ccAGCCGGCGATCCTTACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTc                                                                                                                        >  7:293890/1‑149 (MQ=255)                               cGATCCTTACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTgggc                                                                                                                <  4:179619/149‑3 (MQ=255)                                gATCGTTACTGCGTCCATCGCACTGTGGCGCGTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCGTTCGTTTCCGGTCGCAGCCTGGGGGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCGGGATAGATGCGGTGCGCCTGGGCg                                                                                                               >  8:74260/1‑149 (MQ=255)                                 aTCCTTACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGa                                                                                                              <  1:355271/149‑1 (MQ=255)                                  tCCTTACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAg                                                                                                             >  6:95051/1‑149 (MQ=255)                                     ttACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTc                                                                                                                        >  2:187647/1‑135 (MQ=255)                                     ttACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTc                                                                                                                        <  1:187647/135‑1 (MQ=255)                                             gaccacttcatcttcagctgcttcggcgcagagttccacgaccacagcatcgtccaggccgagaatggcagccatggcgccgtgaccggccggtacggcttcctGCATCa                                                                                                                                          >  6:63984‑M1/105‑110 (MQ=255)                                             gaccacttcatcttcagcggcttcggcgcagagttccacgaccacagcatcgtccaggccgagaatggcagccatggcgccgtgaccggccggtacggcttcctGCATCa                                                                                                                                          <  5:63984‑M1/6‑1 (MQ=255)                                              ccATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAg                                                                                                 >  5:64508/1‑149 (MQ=255)                                                 tCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCcgcg                                                                                                      >  7:91309/1‑141 (MQ=255)                                                 tCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCcgcg                                                                                                      <  8:91309/141‑1 (MQ=255)                                                   gCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGAt                                                                                            <  4:202188/149‑1 (MQ=255)                                                   gCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGAt                                                                                            <  8:63494/149‑1 (MQ=255)                                                      atcttcagcggcttcggcgcagagttccacgaccacagcatcgtccaggccgagaatggcagccatggcgccgtgaccggccggtacggcttcctGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGc                                                                                          >  8:229882‑M1/96‑149 (MQ=255)                                                           cagcggcttcggcgcagagttccacgaccacagcatcgtccaggccgagaatggcagccatggcgccgtgaccggccggtacggcttcctGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAg                                                                                        >  2:65462‑M1/91‑146 (MQ=255)                                                             gcCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGc                                                                                                >  1:60634/1‑135 (MQ=255)                                                             gcCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGc                                                                                                <  2:60634/135‑1 (MQ=255)                                                               cTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGa                                                                                                                                    <  7:149858/97‑1 (MQ=255)                                                               cTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGa                                                                                                                                    >  8:149858/1‑97 (MQ=255)                                                                      gcgcagagttccacgaccacagcatcgtccaggccgagaatggcagccatggcgccgtgaccggccggtacggcttcctGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCACCGCGGTCAGCTGATGCa                                                                                         <  5:183549‑M1/55‑1 (MQ=255)                                                                      gcgcagagttccacgaccacagcatcgtccaggccgagaatggcagccatggcgccgtgaccggccggtacggcttcctGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCACCGCGGTCAGCTGATGCa                                                                                         >  6:183549‑M1/80‑134 (MQ=255)                                                                        gAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCcgcg                                                                                                      >  2:258144/1‑118 (MQ=255)                                                                        gAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCcgcg                                                                                                      <  1:258144/118‑1 (MQ=255)                                                                        gAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑Accggccgg                                                                      >  4:22463/1‑149 (MQ=255)                                                                                      cAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGATCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGTGACCGGCCGGT‑ACGgcttcct                                                          <  8:276271/147‑6 (MQ=255)                                                                                      cAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGATCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGTGACCGGCCGGT‑ACGgcttcct                                                          >  7:276271/1‑142 (MQ=255)                                                                                               cTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATtc                                               >  2:193995/1‑149 (MQ=255)                                                                                                       ccGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCt                                        <  7:74260/148‑1 (MQ=255)                                                                                                        cGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCTg                                       >  6:117723/1‑148 (MQ=255)                                                                                                          gTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCTGGAc                                    <  3:22463/149‑1 (MQ=255)                                                                                                                 ccTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCTGGACGa                                  >  7:292237/1‑144 (MQ=255)                                                                                                                 ccTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCTGGACGa                                  <  8:292237/144‑1 (MQ=255)                                                                                                                        gAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCTGGACGATGCTGTGGTCGt                      <  6:64508/149‑1 (MQ=255)                                                                                                                         aaT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCTGGACGATGCTGTGGTCGTg                     <  5:95051/149‑1 (MQ=255)                                                                                                                          aT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCTGGACGATGCTGTgg                          <  7:176935/143‑1 (MQ=255)                                                                                                                          aT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCTGGACGATGCTGTgg                          >  8:176935/1‑143 (MQ=255)                                                                                                                          aT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCTGGACGATGCTGTGGTCGTgg                    <  8:293890/149‑1 (MQ=255)                                                                                                                           t‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCTGGACGCTGCTGTGGTCGTgg                    >  3:301742/1‑148 (MQ=255)                                                                                                                                 cgcCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCGGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCTGGACGATGCTGTGGTCGTGGAActct              <  5:117723/149‑1 (MQ=255)                                                                                                                                         tCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCTGGACGATTCTGTGGTCGTGGAACTCTGCGCCGaa      <  1:193995/149‑1 (MQ=255)                                                                                                                                           gccgccGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCTGGACGATGCTGTGGTCGTGGAACTCTGCGCCGAAg     <  8:305710/148‑1 (MQ=255)                                                                                                                                             cgccgGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGGCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCTGGACGATGCTGTGGTCGTGGAACTCTGCGCCGAAGCCg  <  2:345333/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              AACTTAACCAGACCGACAAGACCCAGCCGGCGATCCTTACTGCGTCCATCGCACTGTGGCGCCTGTGGCTGGAAGAGGGCGGTGCCAAGCCGGCCTTCGTTTCCGGTCACAGCCTGGGCGAAT‑ACAGCGCCCTGGTCGCCGCCGGCAGCATCAGCCTGAAAGATGCCGTTCGCCTGGTCGAGCGCCGCGGTCAGCTGATGCAGGAAGCCGT‑ACCGGCCGGTCACGGCGCCATGGCTGCCATTCTCGGCCTGGACGATGCTGTGGTCGTGGAACTCTGCGCCGAAGCCG  >  NC_002947/2156863‑2157150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.