| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3377448 = | 50 (0.880) | 3 (0.060) | 3/244 | NT | 5.7% | coding (568/906 nt) | tnpB | transposase subunit B |
| ? | NC_002947 | 3377486 = | 52 (0.970) | coding (606/906 nt) | tnpB | transposase subunit B | |||||
TTCGTTTCAACCTGGCAGGGATTTGCTTATGTGGCGTTCATCGTCGATGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGTTGGCAATACCGGTGACAGCTACGACAACGCACTGGCAGAGACCATCAAC > NC_002947/3377301‑3377594 | ttCGTTTCAACCTGGCAGGGATTTGCTTATGTGGCGTTCATCGTCGATGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGa < 6:238691/149‑1 (MQ=255) gccctcgcttatggatcagttcggtcttgtagaggccgttgatggcctctgccagtgcgttgtcgtagctgtcaccggtattgccaaccgagggttcgatgccagcttcgcccagccgctcgctgtagcgaatcgacagatattgcGAg > 8:70660‑M1/147‑149 (MQ=255) gTTTCAACCTGGCAGGGATTTGCTTATGTGGCGTTCATCGTCGATGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGc < 8:197301/148‑1 (MQ=255) ctcgcttatggatcagttcggtcttgtagaggccgttgatggtctctgccagtgcgttgtcgtagctgtcaccggtattgccaaccgagggttcgatgccagcttcgcccagccgctcgctgtagcgaatcgacagatattgcGAGccc < 7:279408‑M1/6‑1 (MQ=255) ctcgcttatggatcagttcggtcttgtagaggccgttgatggtctctgccagtgagttgtcgtagctgtcacaggtattgccaaccgagggttcgatgccagcttcgcccagccgctcgctgtagcgaatcgacagatattgcGAgcca < 1:261188‑M1/6‑2 (MQ=255) cAACCTGGCAGGGATTTGCTTATGTGGCGTTCATCGTCGATGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCa < 2:44123/148‑1 (MQ=255) tttGCTTATGTGGCGTTCATCGTCGATGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACAATCGTCGGCCTGAGCCCCACCGGCTGGTtcatc > 3:207125/1‑148 (MQ=255) ttATGTGGCGTTCATCGTCGATGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGc > 2:76893/1‑148 (MQ=255) gCGTTCATCGTCGATGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAggg < 6:174406/148‑1 (MQ=255) ttCATCGTCGATGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTc > 2:180949/1‑149 (MQ=255) ccggtgatggtctctgccagtgcgttgtcgtagctgtcaccggtattgccaaccgagggttcgatgccagcttcgcccagccgctcgctgtagcgaatcgacagatattgcGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTc > 8:279408‑M1/112‑149 (MQ=255) cATCGTCGATGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCg < 5:70946/148‑1 (MQ=255) aTCGTCGATGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTCAGCCCCACCCGCAGGTTCATCACAGCGATAGGGGCTCGc > 2:110823/1‑148 (MQ=255) tcgtcgATGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCaa < 1:76893/149‑1 (MQ=255) tcgATGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAatat > 7:50899/1‑149 (MQ=255) tGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGt < 1:37286/149‑1 (MQ=255) cTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGa < 8:317727/146‑1 (MQ=255) cTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTc > 1:73226/1‑149 (MQ=255) tCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTc < 5:63805/131‑1 (MQ=255) tCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTc > 6:63805/1‑131 (MQ=255) tCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACAAGCGCACAGAGTTTGTTCTGGATGGTCTGGAACAGGCGCTTCCCACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATAACAGCGATAGGGGCTCGCAATATCTGTCGATTCg > 6:42684/1‑149 (MQ=255) aCGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGc > 3:321559/1‑148 (MQ=255) ggTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGACCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCtt > 2:261188/1‑147 (MQ=255) gTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTa > 8:179324/1‑147 (MQ=255) tATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAgg > 2:163393/1‑118 (MQ=255) tATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAgg < 1:163393/118‑1 (MQ=255) tAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGc > 7:89821/1‑120 (MQ=255) tAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGc < 8:89821/120‑1 (MQ=255) ggCTGGCGTGTCAGACGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCt < 4:207125/149‑1 (MQ=255) gCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTg > 4:159411/1‑149 (MQ=255) gcatgtgtCGGCTGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTggg > 5:75518/5‑149 (MQ=255) atgtgtCGGCTGACACATGCGCACAGAGTTAGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGc > 1:32634/3‑148 (MQ=255) accggtattgccaaccgagggttcgatgccagcttcgcccagccgctcgctgtagcgaatcgacagatattgcGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATc < 8:103130‑M1/46‑1 (MQ=255) accggtattgccaaccgagggttcgatgccagcttcgcccagccgctcgctgtagcgaatcgacagatattgcGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATc > 7:103130‑M1/74‑119 (MQ=255) aGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTgg < 2:73226/149‑1 (MQ=255) gcgcACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCt > 2:11930/1‑149 (MQ=255) acaGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGt > 6:204955/1‑100 (MQ=255) acaGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGt < 5:204955/100‑1 (MQ=255) acaGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGt > 2:248785/1‑149 (MQ=255) agagTTTGTTCTGGATGCTCTGGAACAGGCGCTTCCCACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTAGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGCACCCTCGGtag > 1:210901/1‑147 (MQ=255) gTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTggg < 1:15364/116‑1 (MQ=255) gTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTggg > 2:15364/1‑116 (MQ=255) ttCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGGGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGTTGGCAATAcc > 1:304954/1‑149 (MQ=255) ttCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGTTGGCAATAc < 1:11930/148‑1 (MQ=255) cTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAg > 1:248863/1‑118 (MQ=255) cTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAg < 2:248863/118‑1 (MQ=255) gATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCATTATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGTTGGCAATACCgg < 1:110823/146‑1 (MQ=255) gATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGTTGGCAATACCGGt < 6:75518/147‑1 (MQ=255) aGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGTTGGCAATACCGGTGACAGCTACGACAAc < 1:248785/149‑1 (MQ=255) gcgcTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGTTGGCAATACCGGTGACAGCTACGACAACg > 3:326978/1‑148 (MQ=255) gcTTCACACTCGTCGGCCTGAGCCCCACCAGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGTTGGCAATAc < 7:79076/126‑1 (MQ=255) gcTTCACACTCGTCGGCCTGAGCCCCACCAGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGTTGGCAATAc > 8:79076/1‑126 (MQ=255) acacTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGTTGGCAATACCGGTGACAGCTACGACAACGCACTGGCa > 3:311052/1‑149 (MQ=255) cacTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGTTGGCAATACCGGTGACAGCTACGACAACGCACTGGCag < 7:179324/149‑1 (MQ=255) acTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACa < 6:248160/73‑1 (MQ=255) acTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACa > 5:248160/1‑73 (MQ=255) acTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGTTGGCAATACCGGTGACAGCTACGACAACGCACTGGCaga < 3:159411/149‑1 (MQ=255) cTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGTTGGCAATACCGGTGACAGCTACGACAACGCACTGGCagag < 8:50899/149‑1 (MQ=255) cTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGTTGGCAATACCGGTGACAGCTACGACAACGCACTGGCAGAGACCATCAAc > 5:227584/1‑149 (MQ=255) cTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGTTGGCAATACCGGTGACAGCTACGACAACGCACTGGCAGAGACCATCAAc < 4:321559/149‑1 (MQ=255) | TTCGTTTCAACCTGGCAGGGATTTGCTTATGTGGCGTTCATCGTCGATGTCTACTCACGGTTTATCGTAGGCTGGCGTGTCAGCCGACACATGCGCACAGAGTTTGTTCTGGATGCTCTGGAACAGGCGCTTCACACTCGTCGGCCTGAGCCCCACCGGCTGGTTCATCACAGCGATAGGGGCTCGCAATATCTGTCGATTCGCTACAGCGAGCGGCTGGGCGAAGCTGGCATCGAACCCTCGGTTGGCAATACCGGTGACAGCTACGACAACGCACTGGCAGAGACCATCAAC > NC_002947/3377301‑3377594 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |