New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3660340 =	46 (0.810)	3 (0.060)	3/248	NT	6.5%	coding (395/795 nt)	PP_3224	class II aldolase/adducin domain‑containing protein
	?	NC_002947	3660373 =	42 (0.770)					coding (362/795 nt)	PP_3224	class II aldolase/adducin domain‑containing protein

TGGTTGCGCAAAATAAGAATGTTGCTGTCGCCCAGATTGGCCACCAGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCGATGATCGC  >  NC_002947/3660193‑3660482                                                                                                                                                    |                                                                                                                                               tGGTTGCGCAAAATAAGAATGTTGCTGTCGCCCAGATTGGCCACCAGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTc                                                                                                                                               <  4:245438/149‑1 (MQ=255)   ccgcctccaacctggtcaaggtcgacgtcgacggcgcgatcatcgacgacccgctggggctgggcatcaatcaggccgggtacgtcattcacagcgccatccaccgcgcacggcctgatctcaaggctgtgctgcacacccatacTcgc                                                                                                                                             <  7:50810‑M1/4‑1 (MQ=255)        gcAAAATAAGAATGTTGCTGTCGCCCAGATTGGCCACCAGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTgg                                                                                                                                        >  5:337533/1‑149 (MQ=255)           aaaTAAGAATGTTGCTGTCGCCCAGATTGGCCACCAGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCg                                                                                                                                     <  5:86313/149‑1 (MQ=255)              tAAGAATGTTGCTGTCGCCCAGATTGGCCACCAGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGac                                                                                                                                  <  6:337533/149‑1 (MQ=255)               aaGAATGTTGCTGTCGCCCAGATTGGCCACCAGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGaca                                                                                                                                 >  3:259615/1‑149 (MQ=255)                          tGTCGCCCAGATTGGCCACCAGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCg                                                                                                                      >  5:18172/1‑149 (MQ=255)                                 cAGATTGGCCACCAGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAg                                                                                                               <  8:45092/149‑1 (MQ=255)                                    gcgcgatcatcgacgacccgctggggctgggcatcaatcaggccgggtacgtcattcacagcgccatccaccgcgcacggcctgatctcaaggctgtgctgcacacccatacTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTAt                                                                                                            >  5:265746‑M1/113‑149 (MQ=255)                                     ttGGCCACCTGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGGTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTAt                                                                                                            <  8:310138/148‑1 (MQ=255)                                        gCCACCAGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTa                                                                                                             <  6:274756/144‑1 (MQ=255)                                        gCCACCAGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTa                                                                                                             >  5:274756/1‑144 (MQ=255)                                          caccaGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTcg                                                                                                                                              >  1:342025/1‑109 (MQ=255)                                          caccaGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTcg                                                                                                                                              <  2:342025/109‑1 (MQ=255)                                             tcgacgacccgctggggctgggcatcaatcaggccgggtacgtcattcacagcgccatccaccgcgcacggcctgatctcaaggctgtgctgcacacccatacTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGa                                                                                                                >  1:44327‑M1/104‑136 (MQ=255)                                             tcgacgacccgctggggctgggcatcaatcaggccgggtacgtcattcacagcgccatccaccgcgcacggcctgatctcaaggctgtgctgcacacccatacTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGa                                                                                                                <  2:44327‑M1/33‑1 (MQ=255)                                             caGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTgca                                                                                                   <  6:131913/149‑1 (MQ=255)                                             caGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTgca                                                                                                   <  8:275649/149‑1 (MQ=255)                                                  gTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGcaca                                                                                              <  6:18172/149‑1 (MQ=255)                                                     cttgctCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGcc                                                                                           >  5:264370/1‑149 (MQ=255)                                                        gctCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCtt                                                                                         <  1:188736/148‑1 (MQ=255)                                                          tCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCtt                                                                                         >  1:87411/1‑146 (MQ=255)                                                                  gtccaggGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGcc                                                                              >  7:97562/1‑149 (MQ=255)                                                                  gtccaggGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGcc                                                                              >  6:222918/1‑149 (MQ=255)                                                                       gggCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTgcg                                                                         >  3:127000/1‑149 (MQ=255)                                                                           gACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGAt                                                                                    >  4:198996/1‑134 (MQ=255)                                                                           gACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGAt                                                                                    <  3:198996/134‑1 (MQ=255)                                                                              gCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGa                                                                  >  4:179598/1‑149 (MQ=255)                                                                                 ttCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATgg                                                               >  8:225638/1‑149 (MQ=255)                                                                                      aGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGCCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCtg                                                          >  4:20175/1‑149 (MQ=255)                                                                                       gTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCTCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCtgt                                                         <  2:293195/149‑1 (MQ=255)                                                                                          gTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGaa                                                      >  6:195199/1‑149 (MQ=255)                                                                                                aaCCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGt                                                <  5:222918/149‑1 (MQ=255)                                                                                                           tGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCtga                                     >  8:50810/1‑149 (MQ=255)                                                                                                            gtaggaGGCCAAGGCGTGCTGGGAGATCGGCAGCAATCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCGTGAGATCAGGCCGTGCGCGGGGGATGGCGCTGTGAATGACGTACCCGGCCtgat                                    <  4:259615/149‑1 (MQ=255)                                                                                                             tagtagGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCtgatt                                   <  5:195199/149‑1 (MQ=255)                                                                                                                tagGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCtgattgat                                <  6:264370/149‑1 (MQ=255)                                                                                                                     cAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGcc                             >  5:13486/1‑147 (MQ=255)                                                                                                                              cTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGCCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGcccagccccagc                   <  3:20175/148‑1 (MQ=255)                                                                                                                               tGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCgg                 <  7:225638/149‑1 (MQ=255)                                                                                                                                 ggAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCgg                                                                      >  3:300573/1‑94 (MQ=255)                                                                                                                                 ggAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCgg                                                                      <  4:300573/94‑1 (MQ=255)                                                                                                                                   agaTCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCtgt                                                         <  8:321959/105‑1 (MQ=255)                                                                                                                                   agaTCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCtgt                                                         >  7:321959/1‑105 (MQ=255)                                                                                                                                      tCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGtcgtcg          <  6:13486/149‑1 (MQ=255)                                                                                                                                      tCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGtcgtcg          >  7:122130/1‑149 (MQ=255)                                                                                                                                      tCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGtcgtcg          <  3:179598/149‑1 (MQ=255)                                                                                                                                      acGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGgtcgac           >  5:97956/2‑146 (MQ=255)                                                                                                                                         gcagcaACCCGTCGCGCTGGGCGGACACATCCGCGCCGTCGCGAGTATGGGTTTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGCTGCCCCGCCCCAGCGTGTCTTCgat        >  5:283808/1‑148 (MQ=255)                                                                                                                                          cagcaACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCgatga      >  4:136800/1‑149 (MQ=255)                                                                                                                                            gcaACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCGATGATc    <  5:188680/149‑1 (MQ=255)                                                                                                                                            gcaACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCGATGATc    <  5:92499/149‑1 (MQ=255)                                                                                                                                              aaCCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCGATGATcgc  >  5:9531/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                               TGGTTGCGCAAAATAAGAATGTTGCTGTCGCCCAGATTGGCCACCAGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCGATGATCGC  >  NC_002947/3660193‑3660482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.