New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3660340 =	46 (0.810)	3 (0.060)	3/248	NT	6.5%	coding (395/795 nt)	PP_3224	class II aldolase/adducin domain‑containing protein
	?	NC_002947	3660373 =	42 (0.770)					coding (362/795 nt)	PP_3224	class II aldolase/adducin domain‑containing protein

CAGATTGGCCACCAGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCGATGATCGCGCCGTCGACGTCGACCTTGACCAGGTTGGAGGCGGTAAT  >  NC_002947/3660225‑3660521                                                                                                                                                     |                                                                                                                                                     cAGATTGGCCACCAGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAg                                                                                                                                                      <  8:45092/149‑1 (MQ=255)    gcgcgatcatcgacgacccgctggggctgggcatcaatcaggccgggtacgtcattcacagcgccatccaccgcgcacggcctgatctcaaggctgtgctgcacacccatacTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTAt                                                                                                                                                   >  5:265746‑M1/113‑149 (MQ=255)     ttGGCCACCTGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGGTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTAt                                                                                                                                                   <  8:310138/148‑1 (MQ=255)        gCCACCAGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTa                                                                                                                                                    <  6:274756/144‑1 (MQ=255)        gCCACCAGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTa                                                                                                                                                    >  5:274756/1‑144 (MQ=255)             caGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTgca                                                                                                                                          <  8:275649/149‑1 (MQ=255)             caGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTgca                                                                                                                                          <  6:131913/149‑1 (MQ=255)                  gTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGcaca                                                                                                                                     <  6:18172/149‑1 (MQ=255)                     cttgctCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGcc                                                                                                                                  >  5:264370/1‑149 (MQ=255)                        gctCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCtt                                                                                                                                <  1:188736/148‑1 (MQ=255)                          tCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCtt                                                                                                                                >  1:87411/1‑146 (MQ=255)                                  gtccaggGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGcc                                                                                                                     >  7:97562/1‑149 (MQ=255)                                  gtccaggGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGcc                                                                                                                     >  6:222918/1‑149 (MQ=255)                                       gggCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTgcg                                                                                                                >  3:127000/1‑149 (MQ=255)                                           gACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGAt                                                                                                                           <  3:198996/134‑1 (MQ=255)                                           gACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGAt                                                                                                                           >  4:198996/1‑134 (MQ=255)                                              gCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGa                                                                                                         >  4:179598/1‑149 (MQ=255)                                                 ttCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATgg                                                                                                      >  8:225638/1‑149 (MQ=255)                                                      aGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGCCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCtg                                                                                                 >  4:20175/1‑149 (MQ=255)                                                       gTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCTCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCtgt                                                                                                <  2:293195/149‑1 (MQ=255)                                                          gTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGaa                                                                                             >  6:195199/1‑149 (MQ=255)                                                                aaCCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGt                                                                                       <  5:222918/149‑1 (MQ=255)                                                                           tGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCtga                                                                            >  8:50810/1‑149 (MQ=255)                                                                            gtaggaGGCCAAGGCGTGCTGGGAGATCGGCAGCAATCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCGTGAGATCAGGCCGTGCGCGGGGGATGGCGCTGTGAATGACGTACCCGGCCtgat                                                                           <  4:259615/149‑1 (MQ=255)                                                                             tagtagGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCtgatt                                                                          <  5:195199/149‑1 (MQ=255)                                                                                tagGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCtgattgat                                                                       <  6:264370/149‑1 (MQ=255)                                                                                     cAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGcc                                                                    >  5:13486/1‑147 (MQ=255)                                                                                              cTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGCCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGcccagccccagc                                                          <  3:20175/148‑1 (MQ=255)                                                                                               tGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCgg                                                        <  7:225638/149‑1 (MQ=255)                                                                                                 ggAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCgg                                                                                                             >  3:300573/1‑94 (MQ=255)                                                                                                 ggAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCgg                                                                                                             <  4:300573/94‑1 (MQ=255)                                                                                                   agaTCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCtgt                                                                                                >  7:321959/1‑105 (MQ=255)                                                                                                   agaTCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCtgt                                                                                                <  8:321959/105‑1 (MQ=255)                                                                                                      tCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGtcgtcg                                                 <  6:13486/149‑1 (MQ=255)                                                                                                      tCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGtcgtcg                                                 >  7:122130/1‑149 (MQ=255)                                                                                                      tCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGtcgtcg                                                 <  3:179598/149‑1 (MQ=255)                                                                                                      acGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGgtcgac                                                  >  5:97956/2‑146 (MQ=255)                                                                                                         gcagcaACCCGTCGCGCTGGGCGGACACATCCGCGCCGTCGCGAGTATGGGTTTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGCTGCCCCGCCCCAGCGTGTCTTCgat                                               >  5:283808/1‑148 (MQ=255)                                                                                                          cagcaACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCgatga                                             >  4:136800/1‑149 (MQ=255)                                                                                                            gcaACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCGATGATc                                           <  5:188680/149‑1 (MQ=255)                                                                                                            gcaACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCGATGATc                                           <  5:92499/149‑1 (MQ=255)                                                                                                              aaCCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCGATGATcgc                                         >  5:9531/1‑149 (MQ=255)                                                                                                                atactcgcgacggcgcggctgtgtccgcccagcgcgaGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCGATGATCgcgc                                       >  5:265746‑M2/38‑149 (MQ=255)                                                                                                                    tcgcgacggcgcggctgtgtccgcccagcgcgaGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCga                                                <  2:44327‑M2/103‑1 (MQ=255)                                                                                                                    tcgcgacggcgcggctgtgtccgcccagcgcgaGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCga                                                >  1:44327‑M2/34‑136 (MQ=255)                                                                                                                            ggCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCCGCCCCAGCGGGTCGTCGATGATCGCGCcgtcgacgtcga                           >  2:103183/1‑149 (MQ=255)                                                                                                                                     aGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCGATGATCGCGCcgtcga                                 <  2:279854/134‑1 (MQ=255)                                                                                                                                     aGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCGATGATCGCGCCGTCGACGTCGACCTTGAc                    >  3:317192/1‑147 (MQ=255)                                                                                                                                     aGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGAGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCGATGATCGCGCcgtcga                                 >  1:279854/1‑134 (MQ=255)                                                                                                                                          cgcCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCGATGATCGCGCCGTCGACGTCGACCTGGTCAAGGtcg             <  3:136800/149‑3 (MQ=255)                                                                                                                                                 gcgaGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCGATGATCGCGCCGTCGACGTCGACCTTGACCAGGTTGGAGGCgg      <  7:50810‑M2/145‑1 (MQ=255)                                                                                                                                                     gTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGCTGCCCAGCCGCCGCGGGTCGTCGATGATCGCGCCGTCGACGTCGAGCTTGCCGAGGTGGAAGGCgggatg  >  8:290119/1‑145 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CAGATTGGCCACCAGCCGTGCTTGCTCGTCCAGGTCCAGGGCGACGCCTTCGTAGTCGTGGTAAACCACGCGGCTGTAGTAGGCCAAGGCGTGCTGGGAGATCGGCAGCAACCCGTCGCGCTGGGCGGACACAGCCGCGCCGTCGCGAGTATGGGTGTGCAGCACAGCCTTGAGATCAGGCCGTGCGCGGTGGATGGCGCTGTGAATGACGTACCCGGCCTGATTGATGCCCAGCCCCAGCGGGTCGTCGATGATCGCGCCGTCGACGTCGACCTTGACCAGGTTGGAGGCGGTAAT  >  NC_002947/3660225‑3660521

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.