New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4028796 =	50 (0.880)	4 (0.070)	4/250	NT	7.8%	coding (174/1623 nt)	PP_3553	AMP‑binding domain‑containing protein
	?	NC_002947	4028828 =	46 (0.840)					coding (206/1623 nt)	PP_3553	AMP‑binding domain‑containing protein

GCTGCCGTCAACCATGTCGCCCTCACCCCGCTGAGCTTCATCGAACGCACCGCTGCCGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGACCGGTGCCGTGCTCAATACCCTGAACGTGCGCCTGGATGCCGAGGCCATC  >  NC_002947/4028653‑4028943                                                                                                                                                 |                                                                                                                                                      gCTGCCGTCAACCATGTCGCCCTCACCCCGCTGAGCTTCATCGAACGCACCGCTGCCGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCt                                                                                                                                                  <  1:169470/149‑1 (MQ=255)          aaCCATGTCGCCCTCACCCCGCTGAGCTTCATCGAACGCACCGCTGCCGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGgccg‑‑gccg                                                                                                                                       >  3:234338/1‑149 (MQ=255)           aCCATGTCGCCCTCACCCCGCTGAGCTTCATCGAACGCACCGCTGCCGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGt                                                                                                                                      <  4:234338/149‑1 (MQ=255)           aCCATGTCGCCCTCACCCCGCTGAGCTTCATCGAACGCACCGCTGCCGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGt                                                                                                                                      <  5:110832/149‑1 (MQ=255)            ccATGTCGCCCTCACCCCGCTGAGCTTCATCGAACGCACCGCTGCCGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCACCGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTg                                                                                                                                     >  3:211948/1‑149 (MQ=255)                   gCCCTCACCCCGCTGAGCTTCATCGAACGCACCGCTGCCGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCg                                                                                                                               <  3:20444/148‑1 (MQ=255)                     ccTCACCCCGCTGAGCTTCATCGAACGCACCGCTGCCGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGcc                                                                                                                            >  6:166745/1‑149 (MQ=255)                            ccGCTGAGCTTCATCGAACGCACCGCTGCCGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGa                                                                                                                     >  6:173414/1‑149 (MQ=255)                             gatggcctcggcatccaggcgcacgttcagggtattgagcacggcaccggtcatgggtacgccgaagtgcgcctcgagcatggtcggggtgttgggcagcatcactgccacggtgtCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGa                                                                                                                     <  1:135966‑M1/33‑1 (MQ=255)                              gCTGAGCTTCATCGAACGCACCGCTGCCGTTTACGGCAACTACACGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGaca                                                                                                                   >  6:159695/1‑149 (MQ=255)                                 gAGCTTCATCGAACGCACCGCTGCCGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCg                                                                                                                >  3:339806/1‑149 (MQ=255)                                       gcatccaggcgcacgttcagggtattgagcacggcaccggtcatgggtacgccgaagtgcgcctcgagcatggtcggggtgttgggcagcatcactgccacggtgtCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCa                                                                                                           >  2:135966‑M1/107‑149 (MQ=255)                                         tCGAACGCACCGCTGCCGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCa                                                                                                                                  >  7:244744/1‑123 (MQ=255)                                         tCGAACGCACCGCTGCCGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCa                                                                                                                                  <  8:244744/123‑1 (MQ=255)                                            aaCGCACCGCTGCCGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGAtg                                                                                                     >  3:61733/1‑149 (MQ=255)                                                   cGCTGCCGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGccc                                                                                               >  5:152397/1‑148 (MQ=255)                                                      tGCCGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAaca                                                                                           >  6:312938/1‑149 (MQ=255)                                                         cGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACGAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGGCGCACAccc                                                                                        >  4:37591/1‑149 (MQ=255)                                                           tttACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGCCACCGTGGCAGTGATGCTGCCCCACCGCCCg                                                                                      >  6:253787/1‑149 (MQ=255)                                                             tACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCCCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGa                                                                                     <  5:312938/148‑1 (MQ=255)                                                                  cAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGc                                                                               <  6:152397/149‑1 (MQ=255)                                                                   aaCTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCt                                                                              >  3:92685/1‑149 (MQ=255)                                                                      tACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTc                                                                             >  7:39129/1‑147 (MQ=255)                                                                        cccGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GTGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGAcc                                                                                   <  3:353866/139‑1 (MQ=255)                                                                        cccGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GTGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGAcc                                                                                   >  4:353866/1‑139 (MQ=255)                                                                        cccGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGa                                                                           <  6:216596/147‑1 (MQ=255)                                                                             ccGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCAc                                                                    <  4:339806/149‑1 (MQ=255)                                                                                tCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAacac                                                                                          >  4:13367/1‑124 (MQ=255)                                                                                tCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAacac                                                                                          <  3:13367/124‑1 (MQ=255)                                                                                  aTCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCg                                                                <  4:92685/148‑1 (MQ=255)                                                                                   tCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGc                                                              >  3:49724/1‑149 (MQ=255)                                                                                    ccACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCg                                                             >  3:168245/1‑149 (MQ=255)                                                                                     cACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGt                                                            <  5:159695/149‑1 (MQ=255)                                                                                      aCGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTa                                                           >  7:56510/1‑149 (MQ=255)                                                                                      aCGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTa                                                           >  1:81320/1‑149 (MQ=255)                                                                                                  gccgcAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCg                                                             >  4:265645/1‑135 (MQ=255)                                                                                                  gccgcAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCg                                                             <  3:265645/135‑1 (MQ=255)                                                                                                   ccgcAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTTGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGGCCATCACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGAGCGGTg                                              <  5:166745/149‑1 (MQ=255)                                                                                                   ccgcAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGACCGGTg                                              <  2:81320/149‑1 (MQ=255)                                                                                                    cgcAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGCCCATGCTCGACGCGCACTTCGGCGGACCCATGACCGGTGc                                             >  5:295169/1‑149 (MQ=255)                                                                                                     gcAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGACCGGTGcc                                            <  8:56510/149‑1 (MQ=255)                                                                                                          tGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGACCGGTGCCGTGCt                                       >  5:313853/1‑149 (MQ=255)                                                                                                                  aaCCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGACCGGTGCCGTGCTCAATAccc                               <  4:61733/149‑1 (MQ=255)                                                                                                                                 tCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTAc                                                          <  3:51183/107‑1 (MQ=255)                                                                                                                                 tCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTAc                                                          >  4:51183/1‑107 (MQ=255)                                                                                                                                  tcactgccacggtgtCGCCACGGCCGATGCCACGGC‑‑CGGCCAGGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGACCGGTGCCGTGCt                                       >  3:219169‑M1/16‑126 (MQ=255)                                                                                                                                  tcactgccacggtgtCGCCACGGCCGATGCCACGGC‑‑CGGCCAGGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGACCGGTGCCGTGCt                                       <  4:219169‑M1/111‑1 (MQ=255)                                                                                                                                  agggcgcTGGCCAGGCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGACCGGTGCCGTGCTCAATACCCTGAACGTGCGCCTg                 >  6:12818/7‑148 (MQ=255)                                                                                                                                    gcgcCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGACCGGTGCCGTGCTc                                      <  3:233993/124‑1 (MQ=255)                                                                                                                                    gcgcCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGACCGGTGCCGTGCTc                                      >  4:233993/1‑124 (MQ=255)                                                                                                                                      gcCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGAcc                                                  >  5:213737/1‑110 (MQ=255)                                                                                                                                      gcCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGAcc                                                  <  6:213737/110‑1 (MQ=255)                                                                                                                                      gcCTGGCCA‑GCGCCCTCGCCG‑‑GCCGTGGCATCGGACGAGGCGACACCGTCGAACTGATGCTGCCCAACACCCAGACCATGCTCGAGGCGCACTTCGGCGTACCCATGACCGCTGCCCTGCTCAAAACCCTGAACGTGCGCCTGGATGcc           >  3:73273/1‑149 (MQ=255)                                                                                                                                        cTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGACCGGTGCCGTGCTCAATACCCTGAACGTGCGCCTGGATGcc           >  3:164961/1‑147 (MQ=255)                                                                                                                                           gCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGACCGGTGCCGTGCTCAATACCCTGAACGTGCGCCTGGATGCCGAg        <  5:173414/147‑1 (MQ=255)                                                                                                                                                gcgcCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGACCGGTGCCGTGCTCAATACCCTGAACGTGCGCCTGGATGCCGAGGCCATc  >  7:217906/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                      GCTGCCGTCAACCATGTCGCCCTCACCCCGCTGAGCTTCATCGAACGCACCGCTGCCGTTTACGGCAACTACCCGGCCGTCATCCACGGCGCCATCCGCCGCAACTGGCAAGAAACCTACCAACGCTGTCGGCGCCTGGCCA‑GCGCCCTGGCCG‑‑GCCGTGGCATCGGCCGTGGCGACACCGTGGCAGTGATGCTGCCCAACACCCCGACCATGCTCGAGGCGCACTTCGGCGTACCCATGACCGGTGCCGTGCTCAATACCCTGAACGTGCGCCTGGATGCCGAGGCCATC  >  NC_002947/4028653‑4028943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.