New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4157696 =	43 (0.760)	3 (0.050)	3/258	NT	6.1%	coding (183/888 nt)	PP_3660	LysR family transcriptional regulator
	?	NC_002947	4157729 =	49 (0.870)					coding (150/888 nt)	PP_3660	LysR family transcriptional regulator

GATCAGGTAAGGCAGCAGGTAACTGGCAGGCGTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGCTGATGTTGCCG  >  NC_002947/4157549‑4157834                                                                                                                                                      |                                                                                                                                           gATCTGGTAAGGCAGCAGGTAACTGGCAGGCGTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCAc                                                                                                                                           >  1:55638/1‑149 (MQ=255)            gcagcaGGTAACTGGCAGGCGTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTAG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGt                                                                                                                                 >  3:53895/1‑148 (MQ=255)              agcagGTAACTGGCAGGCGTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAg                                                                                                                              >  1:93235/1‑149 (MQ=255)               gcagGTAACTGGCAGGCGTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGc                                                                                                                             <  7:65507/149‑1 (MQ=255)                cagGTAACTGGCAGGCGTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCg                                                                                                                                     <  1:87375/140‑1 (MQ=255)                cagGTAACTGGCAGGCGTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCg                                                                                                                                     >  2:87375/1‑140 (MQ=255)                            aGGCGTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGcggc                                                                                                                <  4:142593/149‑1 (MQ=255)                            aGGCGTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGcggc                                                                                                                <  4:53895/149‑1 (MQ=255)                              gCGTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGcggccg                                                                                                              >  3:71606/1‑149 (MQ=255)                                gTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGcggccggc                                                                                                            <  4:138277/149‑1 (MQ=255)                                 tGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCa                                                                                                           <  2:340410/149‑1 (MQ=255)                                    tACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGt                                                                                                        >  7:97264/1‑149 (MQ=255)                                      cTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTg                                                                                                      <  5:97728/149‑1 (MQ=255)                                         gcgcCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGt                                                                                                    >  4:330182/1‑148 (MQ=255)                                         acacggcaacatcagccatgcggcccaagccctgcacctgtctcagccggcggtgtccggccagctcaagctcttgcaagaggcgtttggcgagcccctttaccaacgtACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTgg                                                                                                     >  8:306217‑M1/110‑149 (MQ=255)                                           gcCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTa                                                                                                   >  4:172862/1‑147 (MQ=255)                                           gcCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTa                                                                                                   >  1:212703/1‑147 (MQ=255)                                            ccGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAg                                                                                                <  3:135866/149‑1 (MQ=255)                                             cGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGCTCCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAg                                                                                                <  1:102762/149‑1 (MQ=255)                                             cGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAgg                                                                                               >  5:242519/1‑149 (MQ=255)                                                 gcgcACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGc                                                                                            <  2:166258/148‑1 (MQ=255)                                                  cgcACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTc                                                                                          <  2:212703/149‑1 (MQ=255)                                                         tGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAAc                                                                                   <  3:172862/149‑1 (MQ=255)                                                             gcgcTCCAGCCCGCGCATGGCCTCGCGCAACGCTTGCGCCTGCCGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCCCCGGCCGCTGTCCGCCGCCCGCCGCGGCCGGCACGTGGGTAAAGGGGCTCGCCTAACGCct                                                                               >  1:210259/1‑149 (MQ=255)                                                              cgcTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCctc                                                                              <  2:93235/149‑1 (MQ=255)                                                                 tCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTg                                                                           >  3:181304/1‑149 (MQ=255)                                                                   cAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTg                                                                           <  2:169642/147‑1 (MQ=255)                                                                               ggCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGTCGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGc                                                              >  1:64915/1‑149 (MQ=255)                                                                                     gcgcAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTg                                                                                                      <  4:16914/102‑1 (MQ=255)                                                                                     gcgcAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTg                                                                                                      >  3:16914/1‑102 (MQ=255)                                                                                      gccggcggtgtccggccagctcaagctcttgcaagaggcgtttggcgagcccctttaccaacgtACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTa                                                                                                   >  8:104143‑M1/65‑106 (MQ=255)                                                                                      gccggcggtgtccggccagctcaagctcttgcaagaggcgtttggcgagcccctttaccaacgtACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTa                                                                                                   <  7:104143‑M1/42‑1 (MQ=255)                                                                                                gcgcCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACAccgccg                                              <  2:296963/147‑1 (MQ=255)                                                                                                    cTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCtt                                                                            <  8:320371/113‑1 (MQ=255)                                                                                                    cTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCtt                                                                            >  7:320371/1‑113 (MQ=255)                                                                                                     tGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTgaga                                       >  4:252671/1‑149 (MQ=255)                                                                                                        cGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAg                                    <  2:64915/149‑1 (MQ=255)                                                                                                              gTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGTCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAg                              <  3:330182/149‑1 (MQ=255)                                                                                                               tttCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAgg                             <  3:252671/149‑1 (MQ=255)                                                                                                                   g‑cgcAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCtt                         >  8:118561/1‑149 (MQ=255)                                                                                                                     cgcAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTg                        <  4:181304/149‑1 (MQ=255)                                                                                                                          gcgcTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCg                   >  3:225444/1‑149 (MQ=255)                                                                                                                                 gCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGCt            <  7:118561/149‑1 (MQ=255)                                                                                                                                    tGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGCTGAt         <  8:97264/149‑1 (MQ=255)                                                                                                                                         ccAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGCTGATGTTg     >  5:202271/1‑149 (MQ=255)                                                                                                                                          cAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGCTGATGTTGc    >  7:165451/1‑149 (MQ=255)                                                                                                                                            gCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGCTGATGTTGCCg  >  8:63483/1‑149 (MQ=255)                                                                                                                                                 tGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGcc                    <  6:331171/126‑1 (MQ=255)                                                                                                                                                 tGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGcc                    >  5:331171/1‑126 (MQ=255)                                                                                                                                                      |                                                                                                                                           GATCAGGTAAGGCAGCAGGTAACTGGCAGGCGTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCG‑CGCAGGCGCTCGGCATGC‑GCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGTTGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGCTGATGTTGCCG  >  NC_002947/4157549‑4157834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.