New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4424715 =	39 (0.690)	3 (0.060)	3/238	NT	7.4%	coding (228/273 nt)	PP_5647	hypothetical protein
	?	NC_002947	4424753 =	39 (0.750)					coding (190/273 nt)	PP_5647	hypothetical protein

TGACCTGACGACAGCACGGCAAAAAACAAACTCGAAAGGATCATCCACAAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCG  >  NC_002947/4424569‑4424862                                                                                                                                                   |                                                                                                                                                    gcttcaccttcgtcatcacgacgaaatccttgaggacggcaggagtatcgacgttcaaacccgtctttcggggacaggcgaaacgcagctcttcatcggggtgtactccaaaagcggggaccgtattgtagaagaggcttacagcacc                                                                                                                                                    >  7:49679‑M1/147‑148 (MQ=255)   ttcaccttcgtcatcacgacgaaatccttgaggacggcaggagtatcgacgtgcaaacccgtctttcgcggacaggcgaaacgcagctcttcatcggggtgtactccaaaagcggggaccgaattgtagaagaggcttacagcaCCAGa                                                                                                                                                 <  2:48385‑M1/5‑1 (MQ=255)   aCCTGACGACAGCACGGCAAAAAACAAACTCGAAAGGATCATCCACAAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAg                                                                                                                                                  <  2:127498/148‑1 (MQ=255)             agcaacgCAAAAAACAAACTCGAAAGGATCATCCACAAGATCAAACCCAGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTATTCCAACCCGCCGAATACTAAGGTCTTCGATCGTAGAACACCCCAGACAAAGACTc                                                                                                                                        >  6:293614/7‑148 (MQ=255)              gCACGGCAAAAAACAAACTCGAAAGGATCATCCACAAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGa                                                                                                                                      <  5:38146/149‑1 (MQ=255)              gCACGGCAAAAAACAAACTCGAAAGGATCATCCACAAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGa                                                                                                                                      <  5:32932/149‑1 (MQ=255)                    cAAAAAACAAACTCGAAAGGATCATCCACAAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCa                                                                                                                                  >  8:257654/1‑147 (MQ=255)                     aaaaaaCAAACTCGAAAGGATCATCCACAAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCAACTCATAg                                                                                                                               >  2:656/1‑149 (MQ=255)                      aaaaaCAAACTCGAAAGGATCATCCACAAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGt                                                                                                                              >  7:31465/1‑149 (MQ=255)                        aaacaaacTCGAAAGGATCATCCACAAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGttt                                                                                                                            <  5:293614/149‑1 (MQ=255)                                    aaGGATCATCCACAAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTgg                                                                                                                >  2:11876/1‑149 (MQ=255)                                     aGGAGCATCCACAAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGCGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGt                                                                                                               <  4:299590/149‑1 (MQ=255)                                      ggcaggagtatcgacgtgcaaacccgtctttcgcggacaggcgaaacgcagctcttcatcggggtgtactccaaaagcggggaccgaattgtagaagaggcttacagcaCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTg                                                                                                              >  5:143164‑M1/110‑149 (MQ=255)                                         tcatcCACAAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCAACTCATAGTTTCGCTTGGTCTGGTGCTg                                                                                                           <  1:656/149‑1 (MQ=255)                                              cacaAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGc                                                                                                      <  1:11876/149‑1 (MQ=255)                                               acaAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGcc                                                                                                     >  7:214182/1‑149 (MQ=255)                                               acaAGATCAAGCGCTGCCTGGCGCTATACAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGcc                                                                                                     >  1:193969/1‑149 (MQ=255)                                                 aaGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCctc                                                                                                   >  2:17176/1‑149 (MQ=255)                                                      cAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTa                                                                                              >  6:113149/1‑149 (MQ=255)                                                       aaGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTa                                                                                              <  5:113149/148‑1 (MQ=255)                                                          cgcTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAAt                                                                                          >  7:167436/1‑149 (MQ=255)                                                           gcTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAAtt                                                                                         <  2:153702/149‑1 (MQ=255)                                                               ccTGGCGCTATTCAAAAGCTCGAACGAATATGAGAGAGTCTACGCCCACCCGCCGATAACGAAGGTCATCGCTCGGAGCACACCCCAGACCAACGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCg                                                                                       <  4:31910/147‑1 (MQ=255)                                                                cTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGc                                                                                                      <  3:101887/131‑1 (MQ=255)                                                                cTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGc                                                                                                      >  4:101887/1‑131 (MQ=255)                                                                      cTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCt                                                                              <  8:214182/149‑1 (MQ=255)                                                                       tATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTcccc                                                                                 <  4:13075/145‑1 (MQ=255)                                                                       tATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTcccc                                                                                 >  3:13075/1‑145 (MQ=255)                                                                        ggacaggcgaaacgcagctcttcatcggggtgtactccaaaagcggggaccgaattgtagaagaggcttacagcaCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCt                                                                                                                  >  1:333581‑M1/76‑111 (MQ=255)                                                                        ggacaggcgaaacgcagctcttcatcggggtgtactccaaaagcggggaccgaattgtagaagaggcttacagcaCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCt                                                                                                                  <  2:333581‑M1/36‑1 (MQ=255)                                                                         ttCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCtttt                                                                           >  3:345625/1‑149 (MQ=255)                                                                         ttCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCtttt                                                                           <  8:31465/149‑1 (MQ=255)                                                                           cAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGCTTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTg                                                                          <  2:193969/148‑1 (MQ=255)                                                                           cAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTg                                                                          <  5:308713/148‑1 (MQ=255)                                                                                               agagagTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAagag                                                      <  8:167436/148‑1 (MQ=255)                                                                                                     tCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGtt                                               >  3:343226/1‑149 (MQ=255)                                                                                                       tAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTc                                             <  7:257654/149‑1 (MQ=255)                                                                                                              aCCCGCCGATTATGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTc                                      >  2:187232/1‑149 (MQ=255)                                                                                                                        tACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTTAGCCTCTTCTACAATTAGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAgcc                            >  8:333988/1‑147 (MQ=255)                                                                                                                             aGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGtt                       <  1:17176/149‑1 (MQ=255)                                                                                                                                 cTTCGCTCCGAGCACACCCCAGACCAACGCTCGACTCATAGGTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGGCCGCGAAAGACGGGTTTGCa                   <  4:343226/149‑1 (MQ=255)                                                                                                                                  ttCGCTCGGAGCACACCACAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAACCCTCTTCTACAATTAGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCTCCTGTCAGCGAAATACGGGTTTGCAc                  >  2:302303/1‑149 (MQ=255)                                                                                                                                         ggAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATa           >  8:90875/1‑149 (MQ=255)                                                                                                                                         ggAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCGACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATa           >  3:337115/1‑149 (MQ=255)                                                                                                                                             cacaCCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTcc       >  3:303399/1‑149 (MQ=255)                                                                                                                                              acacCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCt      <  4:345625/149‑1 (MQ=255)                                                                                                                                                 ccccAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGcc   <  4:303399/149‑1 (MQ=255)                                                                                                                                                  cccAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCg  >  1:26364/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TGACCTGACGACAGCACGGCAAAAAACAAACTCGAAAGGATCATCCACAAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCG  >  NC_002947/4424569‑4424862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.