New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4424715 =	39 (0.690)	3 (0.060)	3/238	NT	7.4%	coding (228/273 nt)	PP_5647	hypothetical protein
	?	NC_002947	4424753 =	39 (0.750)					coding (190/273 nt)	PP_5647	hypothetical protein

AGGATCATCCACAAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGC  >  NC_002947/4424605‑4424898                                                                                                                                                     |                                                                                                                                                  aGGAGCATCCACAAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGCGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGt                                                                                                                                                   <  4:299590/149‑1 (MQ=255)  ggcaggagtatcgacgtgcaaacccgtctttcgcggacaggcgaaacgcagctcttcatcggggtgtactccaaaagcggggaccgaattgtagaagaggcttacagcaCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTg                                                                                                                                                  >  5:143164‑M1/110‑149 (MQ=255)     tcatcCACAAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCAACTCATAGTTTCGCTTGGTCTGGTGCTg                                                                                                                                               <  1:656/149‑1 (MQ=255)          cacaAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGc                                                                                                                                          <  1:11876/149‑1 (MQ=255)           acaAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGcc                                                                                                                                         >  7:214182/1‑149 (MQ=255)           acaAGATCAAGCGCTGCCTGGCGCTATACAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGcc                                                                                                                                         >  1:193969/1‑149 (MQ=255)             aaGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCctc                                                                                                                                       >  2:17176/1‑149 (MQ=255)                  cAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTa                                                                                                                                  >  6:113149/1‑149 (MQ=255)                   aaGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTa                                                                                                                                  <  5:113149/148‑1 (MQ=255)                      cgcTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAAt                                                                                                                              >  7:167436/1‑149 (MQ=255)                       gcTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAAtt                                                                                                                             <  2:153702/149‑1 (MQ=255)                           ccTGGCGCTATTCAAAAGCTCGAACGAATATGAGAGAGTCTACGCCCACCCGCCGATAACGAAGGTCATCGCTCGGAGCACACCCCAGACCAACGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCg                                                                                                                           <  4:31910/147‑1 (MQ=255)                            cTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGc                                                                                                                                          >  4:101887/1‑131 (MQ=255)                            cTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGc                                                                                                                                          <  3:101887/131‑1 (MQ=255)                                  cTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCt                                                                                                                  <  8:214182/149‑1 (MQ=255)                                   tATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTcccc                                                                                                                     >  3:13075/1‑145 (MQ=255)                                   tATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTcccc                                                                                                                     <  4:13075/145‑1 (MQ=255)                                     ttCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCtttt                                                                                                               >  3:345625/1‑149 (MQ=255)                                     ttCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCtttt                                                                                                               <  8:31465/149‑1 (MQ=255)                                       cAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGCTTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTg                                                                                                              <  2:193969/148‑1 (MQ=255)                                       cAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTg                                                                                                              <  5:308713/148‑1 (MQ=255)                                                           agagagTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAagag                                                                                          <  8:167436/148‑1 (MQ=255)                                                                 tCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGtt                                                                                   >  3:343226/1‑149 (MQ=255)                                                                   tAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTc                                                                                 <  7:257654/149‑1 (MQ=255)                                                                          aCCCGCCGATTATGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTc                                                                          >  2:187232/1‑149 (MQ=255)                                                                                    tACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTTAGCCTCTTCTACAATTAGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAgcc                                                                >  8:333988/1‑147 (MQ=255)                                                                                         aGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGtt                                                           <  1:17176/149‑1 (MQ=255)                                                                                             cTTCGCTCCGAGCACACCCCAGACCAACGCTCGACTCATAGGTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGGCCGCGAAAGACGGGTTTGCa                                                       <  4:343226/149‑1 (MQ=255)                                                                                              ttCGCTCGGAGCACACCACAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAACCCTCTTCTACAATTAGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCTCCTGTCAGCGAAATACGGGTTTGCAc                                                      >  2:302303/1‑149 (MQ=255)                                                                                                     ggAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATa                                               >  8:90875/1‑149 (MQ=255)                                                                                                     ggAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCGACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATa                                               >  3:337115/1‑149 (MQ=255)                                                                                                         cacaCCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTcc                                           >  3:303399/1‑149 (MQ=255)                                                                                                          acacCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCt                                          <  4:345625/149‑1 (MQ=255)                                                                                                             ccccAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGcc                                       <  4:303399/149‑1 (MQ=255)                                                                                                             caccagaccaagcgaaactatgagtcgagccttggtctggTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGcc                                       >  5:143164‑M2/41‑149 (MQ=255)                                                                                                              cccAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCg                                      >  1:26364/1‑149 (MQ=255)                                                                                                                 agaccaagcgaaactatgagtcgagccttggtctggTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTcc                                                                         >  1:333581‑M2/37‑111 (MQ=255)                                                                                                                 agaccaagcgaaactatgagtcgagccttggtctggTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTcc                                                                         <  2:333581‑M2/75‑1 (MQ=255)                                                                                                                     CAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTc                                 <  3:327860‑M1/147‑1 (MQ=255)                                                                                                                           tCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACCCCTGCCGTCCTCaa                               <  5:91036/143‑1 (MQ=255)                                                                                                                           tCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACACCTGCCGTCCTCaa                               >  6:91036/1‑143 (MQ=255)                                                                                                                                tCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTg                                                         >  3:235906/1‑112 (MQ=255)                                                                                                                                tCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTg                                                         <  4:235906/112‑1 (MQ=255)                                                                                                                                  aTAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGc                                                                               <  6:129095/88‑1 (MQ=255)                                                                                                                                  aTAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGc                                                                               >  5:129095/1‑88 (MQ=255)                                                                                                                                  aTAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCAc                                                      <  1:318942/113‑1 (MQ=255)                                                                                                                                        tCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGAc             <  7:90875/148‑1 (MQ=255)                                                                                                                                          gCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACg            >  1:48385/1‑147 (MQ=255)                                                                                                                                          gCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGaa          <  2:26364/149‑1 (MQ=255)                                                                                                                                                tctggTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGaa    <  2:48385‑M2/144‑1 (MQ=255)                                                                                                                                                   ggTGCTGTAAGCCTCTTCTACAATACGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCCCGAAAGACGGGTTTGAACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAgc  >  7:49679‑M2/3‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                  AGGATCATCCACAAGATCAAGCGCTGCCTGGCGCTATTCAAAAGCTCGAATGAATATGAGAGAGTCTAGGCCCACCCGCCGATTACGAAGGTCTTCGCTCGGAGCACACCCCAGACCAAGGCTCGACTCATAGTTTCGCTTGGTCTGGTGCTGTAAGCCTCTTCTACAATTCGGTCCCCGCTTTTGGAGTACACCCCGATGAAGAGCTGCGTTTCGCCTGTCCGCGAAAGACGGGTTTGCACGTCGATACTCCTGCCGTCCTCAAGGATTTCGTCGTGATGACGAAGGTGAAGC  >  NC_002947/4424605‑4424898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.