New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5636030	44 (0.780)	3 (0.060)	3/248	NT	6.4%	coding (398/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein
	?	NC_002947	= 5636069	45 (0.830)					coding (437/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein

TTCCTCGAAGCCGGCTTCCTCAACGCCAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAA  >  NC_002947/5635885‑5636175                                                                                                                                                  |                                                                                                                                                  ttCCTCGAAGCCGGCTTCCTCAACGCCAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGc                                                                                                                                                >  6:10035/1‑149 (MQ=255)    cTCGAAGCCGGCTTCCTCAACGCCAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCTCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCAGTTCCAGACCATGGGCGCCGCCaa                                                                                                                                             >  6:229448/1‑149 (MQ=255)      cGAAGCCGGCTTCCTCAACGCCAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAAcc                                                                                                                                           >  1:213136/1‑149 (MQ=255)       gAAGCCGGCTTCCTCAACGCCAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAAcc                                                                                                                                           <  6:69926/148‑1 (MQ=255)       gAAGCCGGCTTCCTCAACGCCAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAAcc                                                                                                                                           <  3:329394/148‑1 (MQ=255)       gAAGCCGGCTTCCTCAACGCCAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAAc                                                                                                                                            <  1:90330/147‑1 (MQ=255)         aGCCGGCTTCCTCAACGCCAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGa                                                                                                                                        <  6:342/149‑1 (MQ=255)           ccGGCTTCCTCAACGCCAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATc                                                                                                                                      <  2:213136/149‑1 (MQ=255)            gggCTTCCTCAACGGCAACCTGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTTGTCTCGGTAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACTGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCg                                                                                                                                     <  5:229448/148‑1 (MQ=255)              gCTTCCTCAACGCCAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGa                                                                                                                                        >  1:157197/1‑144 (MQ=255)              gCTTCCTCAACGCCAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGa                                                                                                                                        <  2:157197/144‑1 (MQ=255)                    tCAACGCCAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTc                                                                                                                             >  7:91595/1‑149 (MQ=255)                      aaCGCCAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTc                                                                                                                             <  2:105994/147‑1 (MQ=255)                      aaCGCCAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCg                                                                                                                            <  5:10035/148‑1 (MQ=255)                       aCGCCAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGc                                                                                                                          >  8:292170/1‑149 (MQ=255)                          ccAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTcc                                                                                                                       >  5:76302/1‑149 (MQ=255)                             aCCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGAt                                                                                                                    <  4:131221/149‑1 (MQ=255)                                gggACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGaa                                                                                                                 <  2:281125/149‑1 (MQ=255)                                     ttCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCttctgttcatcggagccgaagctctcgatcaggttggcc                                                                                                            >  5:263955‑M1/1‑110 (MQ=255)                                     ttCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGAAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGaa                                                                                                            >  6:109815/1‑149 (MQ=255)                                       cGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGaa                                                                                                            <  8:217190/147‑1 (MQ=255)                                         aGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCttctgttcatcggagccgaagctctcgatcaggttggccgcgc                                                                                                        <  6:263955‑M1/149‑44 (MQ=255)                                              ggctgcATGCATCTGCAAAGCCTGGTCTCGCAATCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCttctcttcatcggcgccgaagctctcgatcaggttggccgcgcccatg                                                                                                   <  4:285865‑M1/149‑49 (MQ=255)                                                cggcATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTcc                                                                                                 >  3:1034/1‑149 (MQ=255)                                                 ggcATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCt                                                                                                <  8:91595/149‑1 (MQ=255)                                                         gCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCga                                                                                        <  7:328987/149‑1 (MQ=255)                                                            gCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCgatga                                                                                     >  6:111811/1‑149 (MQ=255)                                                                  ccTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACg                                                                               <  4:1034/149‑1 (MQ=255)                                                                   cTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACgg                                                                              <  7:292170/149‑1 (MQ=255)                                                                      gTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCg                                                                           >  7:310927/1‑149 (MQ=255)                                                                           gCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACt                                                                      >  6:106110/1‑149 (MQ=255)                                                                                 cTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGAc                                                                                >  1:39462/1‑133 (MQ=255)                                                                                 cTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGAc                                                                                <  2:39462/133‑1 (MQ=255)                                                                                      tCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATg                                                           <  6:76302/149‑1 (MQ=255)                                                                                         cccACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGtcg                                                        >  5:293247/1‑149 (MQ=255)                                                                                          ccACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACg                                                                               >  5:254936/1‑125 (MQ=255)                                                                                          ccACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACg                                                                               <  6:254936/125‑1 (MQ=255)                                                                                             cTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGa                                                    <  5:106110/149‑1 (MQ=255)                                                                                                ccAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGAc                                                   <  5:111811/147‑1 (MQ=255)                                                                                                      cgccAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAAcccc                                           <  3:95628/149‑1 (MQ=255)                                                                                                                     cacGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGACACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGc                            >  7:41529/1‑149 (MQ=255)                                                                                                                         gCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGACCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGc                        <  2:342907/149‑1 (MQ=255)                                                                                                                              cccGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACa                   >  1:218502/1‑149 (MQ=255)                                                                                                                               ccGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCg                                                                           >  7:293513/1‑92 (MQ=255)                                                                                                                               ccGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCg                                                                           <  8:293513/92‑1 (MQ=255)                                                                                                                                       gACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCAccc          >  1:82103/1‑149 (MQ=255)                                                                                                                                        aCCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCcg         >  8:213796/1‑149 (MQ=255)                                                                                                                                        aCCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGACACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCAccc          <  8:41529/148‑1 (MQ=255)                                                                                                                                          cATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCGCCGATGAAGAGAAgcgcccatggtcaggaacgggtaggccgtggtgccggcgttggcggcctggaagtgggcgatgcaggattgcgagaccaggctttgcagatgcatgcagcc       <  4:285865‑M2/149‑102 (MQ=255)                                                                                                                                               gcgcGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAgcgcccatggtcaggaacgggtaggccgtggtgccggcgttggcggcctggaagtgggcgatgcaggcttgcgagaccaggctgggcagctgcatgccgccgacct  <  6:263955‑M2/149‑107 (MQ=255)                                                                                                                                               gcgcGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGaa  >  8:153703/1‑149 (MQ=255)                                                                                                                                               gcgcGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGaa  >  3:333292/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                  TTCCTCGAAGCCGGCTTCCTCAACGCCAACCGGGACTTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAA  >  NC_002947/5635885‑5636175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.