New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5636030	44 (0.780)	3 (0.060)	3/248	NT	6.4%	coding (398/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein
	?	NC_002947	= 5636069	45 (0.830)					coding (437/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein

TTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACCAGCAGGCGACGGCAGCTACCGGCTCAAAGGCAAC  >  NC_002947/5635921‑5636211                                                                                                                                                     |                                                                                                                                               ttCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGAAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGaa                                                                                                                                                >  6:109815/1‑149 (MQ=255)   cGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGaa                                                                                                                                                <  8:217190/147‑1 (MQ=255)            cggcATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTcc                                                                                                                                     >  3:1034/1‑149 (MQ=255)             ggcATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCt                                                                                                                                    <  8:91595/149‑1 (MQ=255)                     gCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCga                                                                                                                            <  7:328987/149‑1 (MQ=255)                        gCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCgatga                                                                                                                         >  6:111811/1‑149 (MQ=255)                              ccTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACg                                                                                                                   <  4:1034/149‑1 (MQ=255)                               cTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACgg                                                                                                                  <  7:292170/149‑1 (MQ=255)                                  gTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCg                                                                                                               >  7:310927/1‑149 (MQ=255)                                       gCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACt                                                                                                          >  6:106110/1‑149 (MQ=255)                                             cTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGAc                                                                                                                    >  1:39462/1‑133 (MQ=255)                                             cTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGAc                                                                                                                    <  2:39462/133‑1 (MQ=255)                                                  tCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATg                                                                                               <  6:76302/149‑1 (MQ=255)                                                     cccACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGtcg                                                                                            >  5:293247/1‑149 (MQ=255)                                                      ccACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACg                                                                                                                   >  5:254936/1‑125 (MQ=255)                                                      ccACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACg                                                                                                                   <  6:254936/125‑1 (MQ=255)                                                         cTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGa                                                                                        <  5:106110/149‑1 (MQ=255)                                                            ccAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGAc                                                                                       <  5:111811/147‑1 (MQ=255)                                                                  cgccAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAAcccc                                                                               <  3:95628/149‑1 (MQ=255)                                                                                 cacGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGACACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGc                                                                >  7:41529/1‑149 (MQ=255)                                                                                     gCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGACCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGc                                                            <  2:342907/149‑1 (MQ=255)                                                                                          cccGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACa                                                       >  1:218502/1‑149 (MQ=255)                                                                                           ccGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCg                                                                                                               <  8:293513/92‑1 (MQ=255)                                                                                           ccGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCg                                                                                                               >  7:293513/1‑92 (MQ=255)                                                                                                   gACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCAccc                                              >  1:82103/1‑149 (MQ=255)                                                                                                    aCCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCcg                                             >  8:213796/1‑149 (MQ=255)                                                                                                    aCCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGACACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCAccc                                              <  8:41529/148‑1 (MQ=255)                                                                                                      cATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCGCCGATGAAGAGAAgcgcccatggtcaggaacgggtaggccgtggtgccggcgttggcggcctggaagtgggcgatgcaggattgcgagaccaggctttgcagatgcatgcagcc                                           <  4:285865‑M2/149‑102 (MQ=255)                                                                                                           gcgcGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAgcgcccatggtcaggaacgggtaggccgtggtgccggcgttggcggcctggaagtgggcgatgcaggcttgcgagaccaggctgggcagctgcatgccgccgacct                                      <  6:263955‑M2/149‑107 (MQ=255)                                                                                                           gcgcGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGaa                                      >  3:333292/1‑149 (MQ=255)                                                                                                           gcgcGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGaa                                      >  8:153703/1‑149 (MQ=255)                                                                                                              cgtccAACCTGATCGAGAGCTTCGTCTCCTATGAACAGAAGCGCCTGTTCCTTCAACTTATTATCGACGCCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACACTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACca                                   <  2:271463/146‑1 (MQ=255)                                                                                                               ggCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAgcgcccatggtcaggaacgggtaggccgtggtgccggcgttggcggcctggaagtgggcgatgcaggcttgcgagaccaggctgggcagctgcatgccgccgacctcgaa                                  >  5:263955‑M2/1‑39 (MQ=255)                                                                                                                   aaCCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATAc                                                    >  1:148765/1‑127 (MQ=255)                                                                                                                   aaCCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATAc                                                    <  2:148765/127‑1 (MQ=255)                                                                                                                       tGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACCAGCAGGCGAc                          >  3:222127/1‑149 (MQ=255)                                                                                                                            gagaGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACCAGCAGGCGACGGCa                      <  8:310927/148‑1 (MQ=255)                                                                                                                            gagaGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACCAGCAGGCGACGGCa                      <  7:213796/148‑1 (MQ=255)                                                                                                                             agagCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACCAGCAGCCGACGGAAg                     >  7:224812/1‑148 (MQ=255)                                                                                                                                 cTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACCAGCAGGCGACGGCAGCTAcc                >  4:26882/1‑149 (MQ=255)                                                                                                                                 cTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACCAGCAGGCGACGGCAGCTAcc                >  2:176434/1‑149 (MQ=255)                                                                                                                                  ttCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACAAGCAGGCGACGGCAGCTACCg               >  5:322687/1‑149 (MQ=255)                                                                                                                                       cTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACCAGCAgg                              >  6:348832/1‑129 (MQ=255)                                                                                                                                       cTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACCAGCAgg                              <  5:348832/129‑1 (MQ=255)                                                                                                                                           gATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACCAGCAGGCGACGGCAGCTACCGGCTCAAAgg      <  5:109815/149‑1 (MQ=255)                                                                                                                                           gATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACCAGCAGGCGACGGCAGCTACCGGCTCAAAgg      >  4:344556/1‑149 (MQ=255)                                                                                                                                           gATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACCAGCAGGCGACGGCAGCTACCGGCTCAAAgg      >  4:339073/1‑149 (MQ=255)                                                                                                                                               aaCAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACCAGCAGGCGACGGCAGCTACCGGCTCAAAGGcaac  <  4:333292/149‑1 (MQ=255)                                                                                                                                               aaCAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACCAGCAGGCGACGGCAGCTACCGGCTCAAAGGcaa   <  7:153703/148‑1 (MQ=255)                                                                                                                                                aCAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGACGAACCAGCAGGCGACGGCAGCTACCGGCTCAAAGGcaac  >  5:281024/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                               TTCGAGGTCGGCGGCATGCAGCTGCCCAGCCTGGTCTCGCAAGCCTGCATCGCCCACTTCCAGGCCGCCAACGCCGGCACCACGGCCTACCCGTTCCTGACCATGGGCGCGGCCAACCTGATCGAGAGCTTCGGCTCCGATGAACAGAAGCGCCTGTTCCTGCAACCGATGATCGACGGCCGCTACTTCGGCACAATGGCGCTGACCGAACCCCACGCTGGCTCGTCGCTGGCCGACATACGCACCCGCGCCGAACCAGCAGGCGACGGCAGCTACCGGCTCAAAGGCAAC  >  NC_002947/5635921‑5636211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.