New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 99850	45 (0.800)	3 (0.060)	3/244	NT	6.8%	coding (559/651 nt)	PP_0094	5'‑nucleotidase
	?	NC_002947	= 99924	40 (0.750)					coding (485/651 nt)	PP_0094	5'‑nucleotidase

CTGATGCAAATCGGCTACCGTGGCGAAGTGGAAAGCGGGTTCTTCTGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTGAAGTGATGATCGAACGCAAAGTGCCGAGCGATTTCGCGGGCGAACT  >  NC_002947/99776‑100071                                                                                                                                                     |                                                                                                                                                    cTGATGCAAATCGGCTACCGTGGCGAAGTGGAAAGCGGGTTCTTCTGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGAtcatca                                                                                                                                                     <  2:156483/149‑1 (MQ=255)        aaaTCGGCTACCGTGGCGAAGTGGAAAGCGGGTTCTTCTGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAgggtttg                                                                                                                                              <  4:61105‑M2/149‑8 (MQ=255)         aaTCGGCTACCGTGGCGAAGTGGAAAGCGGATTCTTCTGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTgc                                                                                                                                             >  7:9651/1‑149 (MQ=255)          aTCGGCTACCGTGGCGAAGTGGAAAGCGGGTTCTTCTGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTgcg                                                                                                                                            >  3:200328/1‑149 (MQ=255)              gCTACCGTGGCGAAGTGGAAAGCGGGTTCTTCTGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCgg                                                                                                                                        <  4:200328/149‑1 (MQ=255)                 aCCGTGGCGAAGTGGAAAGCGGGTTCTTCTGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTc                                                                                                                                     >  2:218607/1‑149 (MQ=255)                  ccGTGGCGAAGTGGAAAGCGGGTTCTTCTGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGt                                                                                                                                      <  2:330545/147‑1 (MQ=255)                       gCGAAGTGGAAAGCGGGTTCTTCTGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGccc                                                                                                                               <  6:4962/149‑1 (MQ=255)                         gAAGTGGAAAGCGGGTTCTTCTGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCct                                                                                                                              >  8:36190/1‑148 (MQ=255)                            gTGGAAAGCGGGTTCTTCTGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCcttctt                                                                                                                          <  1:47734/149‑1 (MQ=255)                             tGGAAAGCGGGTTCTTCTGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCttcttc                                                                                                                         <  3:61105/149‑1 (MQ=255)                                 aaGCGGGTTCTTCTGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATcc                                                                                                                     <  3:222482/149‑1 (MQ=255)                                          cttctGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCaaa                                                                                                               <  7:90635/146‑1 (MQ=255)                                          cttctGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCaaa                                                                                                               >  8:90635/1‑146 (MQ=255)                                              tGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGt                                                                                                                                      <  6:232100/119‑1 (MQ=255)                                              tGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGt                                                                                                                                      >  5:232100/1‑119 (MQ=255)                                                ccATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAAt                                                                                                       <  7:36190/148‑1 (MQ=255)                                                ccATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATc                                                                                                      <  6:101294/149‑1 (MQ=255)                                                        tctTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCTGATCATCAGGGTTTGCGCCGGGACCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGa                                                                                               >  6:30424/1‑148 (MQ=255)                                                            cccGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGTGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGAcc                                                                                             <  1:211454/146‑1 (MQ=255)                                                              cGGCTCCCAAACCCGTACCCCCCCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCTGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCttgtt                                                                                        >  6:301701/1‑149 (MQ=255)                                                              cGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAgggtttgggagccgggaagagctgatggcagaagaacccgctttccacttcgccacggtag                                                                                        <  7:29313‑M2/149‑62 (MQ=255)                                                               ggCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCttgttg                                                                                       <  8:9651/149‑1 (MQ=255)                                                                    ccAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAgggtttgggagccgggaagagctgatggcagaagaacccgctttccacttcgccacggtagccgatt                                                                                  <  5:348843‑M2/149‑68 (MQ=255)                                                                                  cACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGcgcg                                                                                <  4:281033/137‑1 (MQ=255)                                                                                  cACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGcgcg                                                                                >  3:281033/1‑137 (MQ=255)                                                                                  cACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGtt                                                                    >  2:172872/1‑149 (MQ=255)                                                                                          cGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCg                                                            <  3:58461/149‑1 (MQ=255)                                                                                               tGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCg                                                            >  5:234081/1‑144 (MQ=255)                                                                                                    cccGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCAAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGAGCGTGCCGTCCAGTTCACTGCCGTAGATCACCt                                                  >  8:206950/1‑149 (MQ=255)                                                                                                              cgcgcgcCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTGAAGtga                                          <  7:206950/147‑1 (MQ=255)                                                                                                                cgcgcCGATCAGGTCATGCTTGCGGTCCCTGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTGAAGTgatgat                                      <  5:30424/149‑1 (MQ=255)                                                                                                                cgcgcCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTGAAGTgatgat                                      <  1:218607/149‑1 (MQ=255)                                                                                                                 gcgcCGATCAGTGCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTGAAGTGATGATc                                     <  6:330554/149‑1 (MQ=255)                                                                                                                 gcgcCGATCAGGTCATGCTTGTGGTCCCCGATCATCAg                                                                                                                                                    >  5:287008‑M2/1‑37 (MQ=255)                                                                                                                 gcgcCGATCAGGTCATGCTTGTGGTCCCCGATCATCAg                                                                                                                                                    <  6:287008‑M2/38‑2 (MQ=255)                                                                                                                 gcgcCGATCAGGTCATGCTTGCGGTCCCCGATCATCAgggtttgggagccgggaagagctgatggcagaagaacccgctttccacttcgccacggtagccgatttgcatcaggcttttatcaaggcttgagcgccagcagggctgcttt                                     >  6:348843‑M2/1‑37 (MQ=255)                                                                                                                   gcCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTGAAGTGATGATCg                                    >  5:197466/1‑148 (MQ=255)                                                                                                                     cGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTGAAGTGATGATCGAAc                                 >  5:370/1‑149 (MQ=255)                                                                                                                            gTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTAACTGCCGTAGATCACCTTGAAGTGATGATCGAACGCaaact                          >  3:11707/1‑147 (MQ=255)                                                                                                                               aTGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCttgtt                                                                                        <  6:169788/84‑1 (MQ=255)                                                                                                                               aTGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCttgtt                                                                                        >  5:169788/1‑84 (MQ=255)                                                                                                                                 gCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTGaa                                              <  6:123750/124‑1 (MQ=255)                                                                                                                                 gCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTGaa                                              >  5:123750/1‑124 (MQ=255)                                                                                                                                       ggTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTGAAGTGATGATCGAACGCAAAGTGCCGAGCGAtt               >  7:104568/1‑149 (MQ=255)                                                                                                                                         tCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCAc                                                    >  4:28880/1‑110 (MQ=255)                                                                                                                                         tCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCAc                                                    <  3:28880/110‑1 (MQ=255)                                                                                                                                            ccGATCACCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTg                                                >  6:195134/1‑111 (MQ=255)                                                                                                                                            ccGATCACCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTg                                                <  5:195134/111‑1 (MQ=255)                                                                                                                                                   tcaGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTGAAGTGATGATCGAACGCAAAGTGCCGa                     <  4:299239/131‑1 (MQ=255)                                                                                                                                                   tcaGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTGAAGTGATGATCGAACGCAAAGTGCCGa                     >  3:299239/1‑131 (MQ=255)                                                                                                                                                   tcaGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTGAAGTGATGATCGAACGCAAAGTGCCGAGCGATTTCGTGGGCGAAc   >  2:211591/1‑149 (MQ=255)                                                                                                                                                   tcaGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTGAAGTGATGATCGAACGCAAAGTGCCGAGCGATTTCGCGGGCGAAc   >  6:148556/1‑149 (MQ=255)                                                                                                                                                    caGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATc                                                      <  4:57683/97‑1 (MQ=255)                                                                                                                                                    caGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATc                                                      >  3:57683/1‑97 (MQ=255)                                                                                                                                                     aGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTGAAGTGATGATCGAACGCAAAGTGCCGAGCGATTTCGCCCGCGaaat  <  8:104568/148‑3 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CTGATGCAAATCGGCTACCGTGGCGAAGTGGAAAGCGGGTTCTTCTGCCATCAGCTCTTCCCGGCTCCCAAACCCGTACCCCACCGCGACGGCCTGCAGCCCGTTGCTGCGCGCGCCGATCAGGTCATGCTTGCGGTCCCCGATCATCAGGGTTTGCGCCGGGTCCAGCCCTTCTTCATCCAGCAAATGGCGAATCAGCTCGACCTTGTTGGTGCGCGTGCCGTCCAGTTCACTGCCGTAGATCACCTTGAAGTGATGATCGAACGCAAAGTGCCGAGCGATTTCGCGGGCGAACT  >  NC_002947/99776‑100071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.